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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtgctctgaattcttttaagatatgatgggatatgttggataatgtattcgctctttgacattctttgtgatctatgatcattaatagGTCATTTCTGCCCTGCACTTACTAAGGCTGTGAAAACTATGAAAAAGGGTGAAAAGGTCCTTCTGACAGTTAAACCACAAT

Basic information

species Arabidopsis thaliana
transcript AT3G25230.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164158554|gb|EL976234.1|EL976234
EST:     TGGTACTGTTGTTGGGAAATCTGGTGGTGTGGAGTTCACTGTTAAAGATG                         GTCATTTCTGCCC
genomic: TGGTACTGTTGTTGGGAAATCTGATGGTGTGGAGTTCACTGTTAAAGATGgttagtgctc ... tcattaatagGTCATTTCTGCCC
EST: gi|116475203|gb|EG517795.1|EG517795
EST:     TGGTACTGTTGTTGGGAAATCTGATGGTGTGGAGTTCACTGTTAAAGATG                         GTCATTTCTGCCCTGCACTTACTAAGGCTGTGAAAACTATGAAAAAGGGTG
genomic: TGGTACTGTTGTTGGGAAATCTGATGGTGTGGAGTTCACTGTTAAAGATGgttagtgctc ... tcattaatagGTCATTTCTGCCCTGCACTTACTAAGGCTGTGAAAACTATGAAAAAGGGTG
EST: gi|116434999|gb|EG477591.1|EG477591
EST:     TGGTACTGTTGTTGGGAAATCTGATGGTGTGGAGTTCACTGTTAAAGATG                         GTCATTTCTGCCCTGCACTTACTAAGGCTGTGAAAACTATGAAAAAGGGTG
genomic: TGGTACTGTTGTTGGGAAATCTGATGGTGTGGAGTTCACTGTTAAAGATGgttagtgctc ... tcattaatagGTCATTTCTGCCCTGCACTTACTAAGGCTGTGAAAACTATGAAAAAGGGTG
EST: gi|116475202|gb|EG517794.1|EG517794
EST:     TGGTACTGTTGTTGGGAAATCTGATGGTGTGGAGTTCACTGTTAAAGATG                         GTCATTTCTGCCCTGCACTTACTAAGGCTGTGAAAACTATGAAAAAGGGTG
genomic: TGGTACTGTTGTTGGGAAATCTGATGGTGTGGAGTTCACTGTTAAAGATGgttagtgctc ... tcattaatagGTCATTTCTGCCCTGCACTTACTAAGGCTGTGAAAACTATGAAAAAGGGTG
EST: gi|125189218|gb|EL204172.1|EL204172
EST:     TTGTTGGGAAATCTGATGGTGTGGAGTTCACTGTTAAAGATG                         GTCATTTCTGCCCTGCACTTACTAAGGCTGTGAAAACTATGAAAAAGGGTG
genomic: TTGTTGGGAAATCTGATGGTGTGGAGTTCACTGTTAAAGATGgttagtgctc ... tcattaatagGTCATTTCTGCCCTGCACTTACTAAGGCTGTGAAAACTATGAAAAAGGGTG
EST: gi|116435001|gb|EG477593.1|EG477593
EST:     TGGTACTGTTGTTGGGAAATCTGATGGTGTGGAGTTCACTGTTAAAGATG                         GTCATTTCTGCCCTGCACTTACTAAGGCTGTGAAAACTATGAAAAAGGGTG
genomic: TGGTACTGTTGTTGGGAAATCTGATGGTGTGGAGTTCACTGTTAAAGATGgttagtgctc ... tcattaatagGTCATTTCTGCCCTGCACTTACTAAGGCTGTGAAAACTATGAAAAAGGGTG
EST: gi|47828402|gb|CK118086.1|CK118086
EST:     TGGTACTGTTGTTGGGAAATCTGATGGTGTGGAGTTCACTGCTAAAGATG                         GACATTTCTGCCCTGCACTTACTAAGGCTGTGAAAACTATGAAAAAGGGTG
genomic: TGGTACTGTTGTTGGGAAATCTGATGGTGTGGAGTTCACTGTTAAAGATGgttagtgctc ... tcattaatagGTCATTTCTGCCCTGCACTTACTAAGGCTGTGAAAACTATGAAAAAGGGTG
EST: gi|86070354|gb|DR366111.1|DR366111
EST:     TGGTACTGTTGTTGGGAAATCTGATGGTGTGGAGTTCACTGTTAAAGATG                         GTCATTTCTGCCCTGCACTTACTAAGGCTGT
genomic: TGGTACTGTTGTTGGGAAATCTGATGGTGTGGAGTTCACTGTTAAAGATGgttagtgctc ... tcattaatagGTCATTTCTGCCCTGCACTTACTAAGGCTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttggataatgtattcgctctttgacattctttgtgatctatgatcattaatagGTCATTTCTGCCCTGCACTTACTAAGGCTGTGAAAACTATGAAAAAGGGTGAAAAGGTCCTTCTGACAGTTAAACCACAAT
                    ctttgac  putative branch site (score: 4)
                                        tatgatcattaata  TA-rich tract