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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataaaattgtgaaacttttgcttgcatctgtgtttattctctcattactggatatttctctagactttcttgctgcttatagtgaacaaaaacctcttgcagGACTTGTCTGGTCGACCATATCTTGGTTACAACTTGGAGATACCAACTCAGAGAGTTGGAACATATGATACTCAGGTTCTCTCTTTGCTCCTGGAATTGT

Basic information

species Arabidopsis thaliana
transcript AT3G22425.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G22425.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA10G39370.1 (Glycine max), 3'ss of exon 4
gtataaaattgtgaaacttttgcttgcatctgtgtttattc-tctcattactggatatttctctagactttcttgctgcttatagtgaacaaaaacctcttgcagGACTTGTCTGGTCGACCATATCTTGGTTACAACTTGGAGATACCAACTCAGAGAGTTGGAACATATGATACTCAGGTTCTCTCTTTGCTCCTGGAATTGT
     | ||  |     || || |    | |  ||  |    |   ||| ||     ||||||   |||| | |  ||  |     | |||   || | || ||||| |||||||| |||||| ||||  |||| || ||||| ||||| |||||||| ||||| |||||||||||||||                         
----gagatctttctctttctgttcattttttagtcaagcaataaaatttctcttattttctcgctacttccctcatgggttcctcgcacacttacatttt-cagGATTTGTCTGGCCGACCACATCTAAGTTATAATTTGGACATACCCACTCAGAGGGTTGGGACATATGATACTCAG-------------------------

upper sequence: AT3G22425.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA20G28420.2 (Glycine max), 3'ss of exon 4
gtataaaattgtgaaacttttgcttgcatctgtgtttattc-tctcattactggatatttctctagactttcttgctgcttatagtgaacaaaaacctcttgcagGACTTGTCTGGTCGACCATATCTTGGTTACAACTTGGAGATACCAACTCAGAGAGTTGGAACATATGATACTCAGGTTCTCTCTTTGCTCCTGGAATTGT
     | ||  |     || || |    | |  ||  |    |   ||| ||     |||||||  |||| |||  ||  |     | |||   || | || ||||| |||||||| |||||| ||||  |||| || ||||| ||||| |||||||| ||||| |||||||||||||||                         
----gagatctttctctttctgttcattttttagtcaagcaataaaatttctcttattttctctctacttccttcatgggttcctcgcacacttacttttt-cagGATTTGTCTGGCCGACCACATCTAAGTTATAATTTGGACATACCCACTCAGAGGGTTGGGACATATGATACTCAG-------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164123799|gb|ES163979.1|ES163979
EST:     TAGATGAAGCGCTTATACATGTTTCCTTG                         GACTTGTCTGGTCGACCATATCTTGGTTACAACTTGGAGATACCAACTCAG
genomic: TAGATGAAGCGCTTATACATGTTTCCTTGgtataaaatt ... cctcttgcagGACTTGTCTGGTCGACCATATCTTGGTTACAACTTGGAGATACCAACTCAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctggatatttctctagactttcttgctgcttatagtgaacaaaaacctcttgcagGACTTGTCTGGTCGACCATATCTTGGTTACAACTTGGAGATACCAACTCAGAGAGTTGGAACATATGATACTCAGGTTCTCTCTTTGCTCCTGGAATTGT
                                             cctcttgc  CT-rich tract
                                     aacaaaaa  TA-rich tract