Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcagacattttaaatctcttggtccacttactttttgagttttctgaagaggaaatgtggtatgtgattctattttttgatgaatgtagGTTCTTGTAAGGAACATTCCTCCAGATCCTGATGAATCAGTAAGTGAGCTCGTTGAGCATTTCTTTAAGGTCAACCATCCAGACTACTACCTCACTTACC

Basic information

species Arabidopsis thaliana
transcript AT3G21620.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G21620.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: LOC_Os05g51630.2 (Oryza sativa), 3'ss of exon 3
---gtatgcagacatt-ttaaatctcttggtccacttacttt------ttgagttttctgaagaggaaatgtggtatgtgattctattttttgatgaatgtagGTTCTTGTAAGGAACATTCCTCCAGATCCTGATGAATCAGTAAGTGAGCTCGTTGAGCATTTCTTTAAGGTCAACCATCCAGACTACTACCTCACTTACC
   |||  | |  ||  ||  || |||   |  | | |          || | ||   |   |  |   ||| | |||    || | |  || ||   | |||||||||||  |||| || ||||||||||||||||||||| | ||||||||||| |||||||||||    || || ||||| ||  | || || |   |||
gttgtagacgggaatggtttcatatctcaattgaataaacacgatgagttaatttccttctggttggtttgttgaatgcacctcaaatgatttat---tttagGTTCTTGTGCGGAATATACCTCCAGATCCTGATGAATCAATTAGTGAGCTCGTGGAGCATTTCTTCCTTGTTAATCATCCTGATCATTATCTAAGACACC

upper sequence: AT3G21620.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA02G43910.2 (Glycine max), 3'ss of exon 4
------------gtatgcagacattttaaatctcttggtccacttacttt---ttgagttttctgaagaggaaatgtggtatgtgattctattttttgatgaatgtagGTTCTTGTAAGGAACATTCCTCCAGATCCTGATGAATCAGTAAGTGAGCTCGTTGAGCATTTCTTTAAGGTCAACCATCCAGACTACTACCTCACTTACC
             ||   | | |    |||    || | | |   |||||   ||| |||| |  | |        || |   | || | ||||    ||   || |||| ||||| || ||  | || || |||||||||||||| || |||||||| || || |||||||||  |||||| ||||||||  |||| |||||| | |
accttcctacctttaaaaatatagaggaaaaacttttgacaataaactttatcttgtgtttccccatg------cttgctccttcatgcaatttac--atttgtgcagGTACTTGTTAGAAATGTACCACCTGATCCTGATGAATCGGTCAGTGAGCTAGTGGAACATTTCTTTTTGGTCAATCATCCAGATCACTATCTCACTCAGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgagttttctgaagaggaaatgtggtatgtgattctattttttgatgaatgtagGTTCTTGTAAGGAACATTCCTCCAGATCCTGATGAATCAGTAAGTGAGCTCGTTGAGCATTTCTTTAAGGTCAACCATCCAGACTACTACCTCACTTACC
                                        ttttgat  putative branch site (score: 4)
                                attctattttttgat  TA-rich tract