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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatattctctgcctacgtacttggtagtgttttaagcagttcttgctggtatctacagctgtcttttttgttggttttaatttttgtagTTCCTCCGGATGATGAGGGTTGGCTATGCCCCGGATGTGATTGCAAAGATGACAGCTTGGACTTGCTTAATGATTCTTTAGGGACAAAATTTTCGGTCAG

Basic information

species Arabidopsis thaliana
transcript AT3G19510.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G19510.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA20G26700.1 (Glycine max), 3'ss of exon 4
gtaatattctctgcctacgta--cttggtagtgttttaagcagttcttgctggtatctacagctgtcttttttgttggttttaatttttgtagTTCCTCCGGATGATGAGGGTTGGCTATGCCCCGGATGTGATTGCAAAGATGACAGCTTGGACTTGCTTAATGATTCTTTAGGGACAAAATTTTCGGTCAG
|||||   ||  | |||| ||   |   | ||   ||||  |  ||  | |   || ||      | | | |  ||  || |     ||  |||||| || |  |||||||||||| ||||||| ||||||||||||||||||||| || ||||| |  |||| || || || || ||||   ||||  | ||
gtaatcccctg-gtctacctaaattgattggtaacttaattatgtcaagtt---atttat---cttttatgtatttacttctgtggcttacagTTCCACCTGGCGATGAGGGTTGGTTATGCCCAGGATGTGATTGCAAAGATGACTGCATGGACCTTGTTAACGACTCCTTTGGAACAAGTCTTTCTATTAG

upper sequence: AT3G19510.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA10G40640.1 (Glycine max), 3'ss of exon 3
gtaatattctctgcctacgtacttggtagtgttttaagcagttcttgctggt-atctacagctgtcttttttgttggttttaatttttgtagTTCCTCCGGATGATGAGGGTTGGCTATGCCCCGGATGTGATTGCAAAGATGACAGCTTGGACTTGCTTAATGATTCTTTAGGGACAAAATTTTCGGTCAG
|||||   ||   |   | || |   | ||   ||     |||||| |  || || ||      | | | |  ||  || |     ||  |||||| || |  |||||||||||| ||||||| ||||||||||||||||||||| || ||||| |  |||| || || || || ||||   | ||  | ||
gtaatcccctggtctaccttattgattggtaacttt----gttctttcaagttatttat---catttatatatttacttctgtggcttacagTTCCACCTGGCGATGAGGGTTGGTTATGCCCAGGATGTGATTGCAAAGATGACTGCATGGACCTTGTTAACGACTCCTTCGGAACAAGTCTCTCTATTAG

upper sequence: AT3G19510.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: Vv03s0091g00290.t01 (Vitis vinifera), 3'ss of exon 3
-----------gtaat--attctctgcctacgtacttgg--tagtg--ttttaagcagttcttgctggtatctacagct-------gtcttttttgttggttttaatttt-----tgtagTTCCTCCGGATGATGAGGGTTGGCTATGCCCCGGATGTGATTGCAAAGATGACAGCTTGGACTTGCTTAATGATTCTTTAGGGACAAAATTTTCGGTCAG
            | ||  |||   |||  |   | |||   |||||  | || |     |  |  |   || ||    |       || ||| || ||  | || |||||     || ||||||||| ||||| ||||||||||| ||||| | |||||||||||||| |||| || ||||| |||||||||| |||  ||| |||||| |||| || | 
gtaacatccaactcattcatttgatgctaataaatttgaattagtggttcttgaatcacttattttttcatttatgttttcttatggtgtttattattattctttattttattattgcagTTCCTCCTGATGACGAGGGTTGGCTGTGCCCTGCATGTGATTGCAAAGTTGACTGCATGGACCTGCTTAATGACTCTCAAGGAACAAAACTTTCTGTAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agcagttcttgctggtatctacagctgtcttttttgttggttttaatttttgtagTTCCTCCGGATGATGAGGGTTGGCTATGCCCCGGATGTGATTGCAAAGATGACAGCTTGGACTTGCTTAATGATTCTTTAGGGACAAAATTTTCGGTCAG
                                        ttttaat  putative branch site (score: 3)
                                              tttttgt  CT-rich tract
                             ttttttgttggtttta  TA-rich tract