1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtttgtttaaacaaactttcactaatgcttgtgtgttgccgggattcttataaaatagttttcttgcttttggtggatgaagCTTGACAAGAAGCTGCTCAAGAGGTATTTTGAGGAGCATCCACATGAAAATATTCCAGATTTTTCTGATAAG
species | Arabidopsis thaliana |
transcript | AT3G19340.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAAAGTTGATGAGTCTAAG CTTGACAAGAAGCTGCTCAAGAGGTATTTTGAGGAGCATACCACEST: gi|124849753|gb|EH934190.1|EH934190
genomic: CAAAGTTGATGAGTCTAAGgtttgtttaa ... gtggatgaagCTTGACAAGAAGCTGCTCAAGAGGTATTTTGAGGAGCAT-CCAC
EST: ACTCTGGGCAGTATCTTCNCAATCTTCCCATCAAAGTTGATGAGTCTAAG CTTGACAAGAAG
genomic: ACTCTGGGCAGTATCTTCTCAATCTTCCCATCAAAGTTGATGAGTCTAAGgtttgtttaa ... gtggatgaagCTTGACAAGAAG
cttgtgtgttgccgggattcttataaaatagttttcttgcttttggtggatgaagCTTGACAAGAAGCTGCTCAAGAGGTATTTTGAGGAGCATCCACATGAAAATATTCCAGATTTTTCTGATAAG
attcttataaaatagt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtttaaacaaactttcactaatgcttgtgtgttgccgggattcttataaaatagttttcttgcttttggtggatgaagCTTGACAAGAAGCTGCTCAAGAGGTATTTTGAGGAGCATCCACATGAAAATATTCCAGATTTTTCTGATAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA