1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtaggaattacttcccttgcttcctctgaaaatgtctttataaatattgttagtctcagttccatgctatttaagtaactgtaagcatgttcacttttcttttaacttgatattagGAAGCTCATCTGCAACCAGCTCGACAGCTGTTGGGTTCGACGAGAGAATGTTGCTACACTCAGAA
species | Arabidopsis thaliana |
transcript | AT3G18520.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCCCTTTTTTAAAGACACTGGTCTCATTGAAGTCGAGGAGAAATATGGAG GAAGCTCATCTGCA-CCAGCTCGACAGCTGTTGGGTTCGACCAGAGAATGEST: gi|125042538|gb|EL114807.1|EL114807
genomic: TCCCTTTTTTAAAGACACTGGTCTCATTGAAGTCGAGGAGAAATATGGAGgtaggaatta ... ttgatattagGAAGCTCATCTGCAACCAGCTCGACAGCTGTTGGGTTCGACGAGAGAATG
EST: TTTTTTAAAGACACTGGTCTCATTGAAGTCGAGGAGAAATATGGAG GAAGCTCATCTGCAACCAGCTCGACAGCTGTTGGGTTCGACGAGAGAATGT
genomic: TTTTTTAAAGACACTGGTCTCATTGAAGTCGAGGAGAAATATGGAGgtaggaatta ... ttgatattagGAAGCTCATCTGCAACCAGCTCGACAGCTGTTGGGTTCGACGAGAGAATGT
ccatgctatttaagtaactgtaagcatgttcacttttcttttaacttgatattagGAAGCTCATCTGCAACCAGCTCGACAGCTGTTGGGTTCGACGAGAGAATGTTGCTACACTCAGAA
cttttcttttaactt CT-rich tract
ttttcttttaacttga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggaattacttcccttgcttcctctgaaaatgtctttataaatattgttagtctcagttccatgctatttaagtaactgtaagcatgttcacttttcttttaacttgatattagGAAGCTCATCTGCAACCAGCTCGACAGCTGTTGGGTTCGACGAGAGAATGTTGCTACACTCAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT