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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gaggtatgggaatactactgttatatcattactagaccaggattgattgtatcagatttctatttcctgtaatgatgatcagtgttttgtgttgttgcagATTCGTAATGAAAAGGCGAGGAGATATCTCGGCAATATGAGGAGAAAACCGCCAGTTCCATTCACTCACAAATTTCCTCATGTAGACCCATTGGCCCTTC

Basic information

species Arabidopsis thaliana
transcript AT3G18040.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124956904|gb|EL031783.1|EL031783
EST:     ATATTATGACTGATTTGCTTGGTACTCCTCCTCCCGAAGCTATTGCAAGG                         ATTCGTAATGAAAAGGCGAGGAGATATCTCGGCAATATGAGGAGAA
genomic: ATATTATGACTGATTTGCTTGGTACTCCTCCTCCCGAAGCTATTGCAAGGgttagttggt ... gttgttgcagATTCGTAATGAAAAGGCGAGGAGATATCTCGGCAATATGAGGAGAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgtatcagatttctatttcctgtaatgatgatcagtgttttgtgttgttgcagATTCGTAATGAAAAGGCGAGGAGATATCTCGGCAATATGAGGAGAAAACCGCCAGTTCCATTCACTCACAAATTTCCTCATGTAGACCCATTGGCCCTTC
 gattgat  putative branch site (score: 4)
          atttctattt  TA-rich tract