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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttttcttttgatttaggcatcagctgcattgtgtttgctgctagatcattagacagtgataagtgttgttcctattttaaatgctttagGTCTTCTACTGACCCTAGCTGGTATCGGGGAACAAGGACTATCC

Basic information

species Arabidopsis thaliana
transcript AT3G16260.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19877303|gb|AU238134.1|AU238134
EST:     TCATATATTTTTGTCTCGNGTGTGCTCAGAGACAGCAGGCGGGCTTCCAG                         GTCTTCTACTGACCCTAGCT
genomic: TCATATATTTTTGTCTCGTGTGTGCTCAGAGACAGCAGGCGGGCTTCCAGgtttgttttc ... aatgctttagGTCTTCTACTGACCCTAGCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgctgctagatcattagacagtgataagtgttgttcctattttaaatgctttagGTCTTCTACTGACCCTAGCTGGTATCGGGGAACAAGGACTATCC
                                      tattttaaatgcttta  TA-rich tract