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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggtgaatatttgaatttgtttctctattttattaatatatatttatgcttgccatgacatgggataaccaaaacatcacacattttatgagttcagagggctgtaattagtcttttagatatagtttttatgatttcatttcatctcgtctaatatcattttaatatgacttatactcagACGATTACAAAATCCTTCGAGGTGACGGAATTGCCAG

Basic information

species Arabidopsis thaliana
transcript AT3G15980.3
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116382436|gb|EG425028.1|EG425028
EST:     TAGCAAGTTTGTATTCTGGAACCGCGTGTATTTGGAACTACCAGACACAG                         ACGATTACAAAATCCTTCGAGGTGACGGAATTGCCAG
genomic: TAGCAAGTTTGTATTCTGGAACCGTGTGTATTTGGAACTACCAGACACAGgtgggtgaat ... ttatactcagACGATTACAAAATCCTTCGAGGTGACGGAATTGCCAG
EST: gi|116382435|gb|EG425027.1|EG425027
EST:     TAGCAAGTTTGTATTCTGGAACCGCGTGTATTTGGAACTACCAGACACAG                         ACGATTACAAAATCCTTCGAGGTGACGGAATTGCCAG
genomic: TAGCAAGTTTGTATTCTGGAACCGTGTGTATTTGGAACTACCAGACACAGgtgggtgaat ... ttatactcagACGATTACAAAATCCTTCGAGGTGACGGAATTGCCAG
EST: gi|116382437|gb|EG425029.1|EG425029
EST:     TAGCAAGTTTGTATTCTGGAACCGCGTGTATTTGGAACTACCAGACACAG                         ACGATTACAAAATCCTTCGAGGTGACGGAATTGCCAG
genomic: TAGCAAGTTTGTATTCTGGAACCGTGTGTATTTGGAACTACCAGACACAGgtgggtgaat ... ttatactcagACGATTACAAAATCCTTCGAGGTGACGGAATTGCCAG
EST: gi|116382434|gb|EG425026.1|EG425026
EST:     TAGCAAGTTTGTATTCTGGAACCGCGTGTATTTGGAACTACCAGACACAG                         ACGATTACAAAATCCTTCGAGGTGACGGAATTGCCAG
genomic: TAGCAAGTTTGTATTCTGGAACCGTGTGTATTTGGAACTACCAGACACAGgtgggtgaat ... ttatactcagACGATTACAAAATCCTTCGAGGTGACGGAATTGCCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttatgatttcatttcatctcgtctaatatcattttaatatgacttatactcagACGATTACAAAATCCTTCGAGGTGACGGAATTGCCAG
                                 ttttaat  putative branch site (score: 3)
                       tctaatatcattttaa  TA-rich tract