1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttccaaattaaattagtagaaagctacatagaccagtcttatggagtacttataacaacaaaaaaaatgaaaatattcaattggttactaaatggtgcagGAGGATTTAACCAACCAATCATGTGTGGTGGGGAGCCAAGAGCAATGCTTAAGAAAGATCGAGGCAAAGCCGATTCTCCGATATACACTATGCAGATTTG
species | Arabidopsis thaliana |
transcript | AT3G15840.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGCTGCAAGCAAACTCACTCTTAACGAAGACTATGGGGTTGCTTTCAACG GAGGATTTAACCAACCAATCATGTGTGGTGGGGAGCCAAGAGCAATGCTTAEST: gi|116420760|gb|EG463352.1|EG463352
genomic: AGCTGCAAGCAAACTCACTCTTAACGAAGACTATGGGGTTGCTTTCAACGgtgagtttct ... aatggtgcagGAGGATTTAACCAACCAATCATGTGTGGTGGGGAGCCAAGAGCAATGCTTA
EST: AGCTGCAAGCAAACTCACTCTTAACGAAGACTATGGGGTTGCTTTCAACG GAGGATTTAACCAACCAATCATGTGTGGTGGGGAGCCAAGAGCAATGCTTAEST: gi|47828708|gb|CK118392.1|CK118392
genomic: AGCTGCAAGCAAACTCACTCTTAACGAAGACTATGGGGTTGCTTTCAACGgtgagtttct ... aatggtgcagGAGGATTTAACCAACCAATCATGTGTGGTGGGGAGCCAAGAGCAATGCTTA
EST: AGCTGCAAGCAAACTCACTCTTAACGAAGACTATGGGGTTGCTTTCAACG GAGGATTTAACCAACCAATCATGTGTGGTGGGGAGCCAAGAGCAATGCTTAEST: gi|116428971|gb|EG471563.1|EG471563
genomic: AGCTGCAAGCAAACTCACTCTTAACGAAGACTATGGGGTTGCTTTCAACGgtgagtttct ... aatggtgcagGAGGATTTAACCAACCAATCATGTGTGGTGGGGAGCCAAGAGCAATGCTTA
EST: AGCTGCAAGCAAACTCACTCTTAACGAAGACTATGGGGTTGCTTTCAACG GAGGATTTAACCAACCAATCATGTGTGGTGGGGAGCCAAGAGCAATGCTTAEST: gi|124727942|gb|EH819344.1|EH819344
genomic: AGCTGCAAGCAAACTCACTCTTAACGAAGACTATGGGGTTGCTTTCAACGgtgagtttct ... aatggtgcagGAGGATTTAACCAACCAATCATGTGTGGTGGGGAGCCAAGAGCAATGCTTA
EST: GACTATGGGGTTGCTTTCAACG GAGGATTTAACCAACCTAATCATGTGTGGTGGGGAGCCAAGAGCAATGCTTEST: gi|47831953|gb|CK121637.1|CK121637
genomic: GACTATGGGGTTGCTTTCAACGgtgagtttct ... aatggtgcagGAGGATTTAACCAACC-AATCATGTGTGGTGGGGAGCCAAGAGCAATGCTT
EST: AGCTGCAAGCAAACTCACTCTTAACGAAGACTATGGGGTTGCTTTCAACG GAGGATTTAACCAACCAATCATGTGTGGTGGGGAGCCAAGAGCAATGCTTAEST: gi|116441100|gb|EG483692.1|EG483692
genomic: AGCTGCAAGCAAACTCACTCTTAACGAAGACTATGGGGTTGCTTTCAACGgtgagtttct ... aatggtgcagGAGGATTTAACCAACCAATCATGTGTGGTGGGGAGCCAAGAGCAATGCTTA
EST: AGCTGCAAGCAAACTCACTCTTAACGAAGACTATGGGGTTGCTTTCAACG GAGGATTTAACCAACCAATCATGTGTGGTGGGGAGCCAAGAGCAATGCTTAEST: gi|124706136|gb|EH797538.1|EH797538
genomic: AGCTGCAAGCAAACTCACTCTTAACGAAGACTATGGGGTTGCTTTCAACGgtgagtttct ... aatggtgcagGAGGATTTAACCAACCAATCATGTGTGGTGGGGAGCCAAGAGCAATGCTTA
EST: GAAGACTATGGGGTTGCTTTCAACG GAGGATTTAACCAACCAATCATGTGTGGTGGGGAGCCAAGAGCAATGCTTAEST: gi|116441102|gb|EG483694.1|EG483694
genomic: GAAGACTATGGGGTTGCTTTCAACGgtgagtttct ... aatggtgcagGAGGATTTAACCAACCAATCATGTGTGGTGGGGAGCCAAGAGCAATGCTTA
EST: AGCTGCAAGCAAACTCACTCTTAACGAAGACTATGGGGTTGCTTTCAACG GAGGATTTAACCAACCAATCATGTGTGGTGGGGAGCCAAGAGCAATGCTTAEST: gi|125202456|gb|EL217410.1|EL217410
genomic: AGCTGCAAGCAAACTCACTCTTAACGAAGACTATGGGGTTGCTTTCAACGgtgagtttct ... aatggtgcagGAGGATTTAACCAACCAATCATGTGTGGTGGGGAGCCAAGAGCAATGCTTA
EST: AGCTGCAAGCAAACTCACTCTTAACGAAGACTATGGGGTTGCTTTCAACG GAGGATTTAACCAACCAATCATGTGTGGTGGGEST: gi|116479684|gb|EG522276.1|EG522276
genomic: AGCTGCAAGCAAACTCACTCTTAACGAAGACTATGGGGTTGCTTTCAACGgtgagtttct ... aatggtgcagGAGGATTTAACCAACCAATCATGTGTGGTGGG
EST: AGCTGCAAGCAAACTCACTCTTAACGAAGACTATGGGGTTGCTTTCAACG GAGGATTTAACCAACCAATCATGTGTGGTGGGGAGCCAAGAGCAATGCTTAEST: gi|124873658|gb|EH955303.1|EH955303
genomic: AGCTGCAAGCAAACTCACTCTTAACGAAGACTATGGGGTTGCTTTCAACGgtgagtttct ... aatggtgcagGAGGATTTAACCAACCAATCATGTGTGGTGGGGAGCCAAGAGCAATGCTTA
EST: AGCTGCAAGCAAACTCACTCTTAACGAAGACTATGGGGTTGCTTTCAACG GAGGATTTAACCAACCAATCATGTGTGGTGGGGAGCCAAGAGCAAEST: gi|116479685|gb|EG522277.1|EG522277
genomic: AGCTGCAAGCAAACTCACTCTTAACGAAGACTATGGGGTTGCTTTCAACGgtgagtttct ... aatggtgcagGAGGATTTAACCAACCAATCATGTGTGGTGGGGAGCCAAGAGCAA
EST: AGCTGCAAGCAAACTCACTCTTAACGAAGACTATGGGGTTGCTTTCAACG GAGGATTTAACCAACCAATCATGTGTGGTGGGGAGCCAAGAGCAATGCTTA
genomic: AGCTGCAAGCAAACTCACTCTTAACGAAGACTATGGGGTTGCTTTCAACGgtgagtttct ... aatggtgcagGAGGATTTAACCAACCAATCATGTGTGGTGGGGAGCCAAGAGCAATGCTTA
gtacttataacaacaaaaaaaatgaaaatattcaattggttactaaatggtgcagGAGGATTTAACCAACCAATCATGTGTGGTGGGGAGCCAAGAGCAATGCTTAAGAAAGATCGAGGCAAAGCCGATTCTCCGATATACACTATGCAGATTTG
tactaaa putative branch site (score: 1)
aaaaaaaatgaaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttccaaattaaattagtagaaagctacatagaccagtcttatggagtacttataacaacaaaaaaaatgaaaatattcaattggttactaaatggtgcagGAGGATTTAACCAACCAATCATGTGTGGTGGGGAGCCAAGAGCAATGCTTAAGAAAGATCGAGGCAAAGCCGATTCTCCGATATACACTATGCAGATTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT