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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtatgtggacacttaatgaaagtttcatacagagagttgtataatctcattctcaaagttttttcataaagtttggctttgttattgaagttcgttaccgttcattccttaatctttgacctatatgatctagacctccctttgattttcaagtctttatttctttgcagCCACTGGCCTACGTTTCCACAGATCTTCATTAAGGGAGAGTTCATTGGCGGCTCAGACATCATCCTTAACATGCACAAG

Basic information

species Arabidopsis thaliana
transcript AT3G15660.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G15660.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: Vv09s0002g06040.t01 (Vitis vinifera), 3'ss of exon 5
gtgagtatgtggacacttaatgaaagtttcatacagagagttgtataatctcattctcaaagttttttcataaagtttggctttgttattgaagttcgttaccgttcattccttaatctttgacctatatgatctagacctccctttgattttcaagtctttatttctttgcagCCACTGGCCTACGTTTCCACAGATCTTCATTAAGGGAGAGTTCATTGGCGGCTCAGACATCATCCTTAACATGCACAAG
                                                                       | |   |   |   ||  | || | |    |   | |||    |||   |||  | |     ||  |  |  |  | ||     | ||| |   ||| |||||||||||||| || |||||||| || ||||| ||||| |||||||| || || || || || || || ||||||||| ||
----------------------------------------------------------------------aacaccctcattggcttcataaaatac----caaattattaaaaaatagatgatttgtgatgcctgcatgtttcactaatcgaacactctctccatctctgcagCCACTGGCCCACATTTCCACAAATATTCATAAAGGGGGAGTTCATAGGGGGATCTGATATTATTCTCAACATGCACCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86075951|gb|DR371708.1|DR371708
EST:     AGAAACATTCTAGAAGACCAAGAGTTGAAAAACGCTGTGAAATCCTTCAG                         CCACTGGCCTACGTTTCCACAGATCTTCATTAAGGGAGAGTTCATTGGCGG
genomic: AGAAACATTCTAGAAGACCAAGAGTTGAAAAACGCTGTGAAATCCTTCAGgtgagtatgt ... ttctttgcagCCACTGGCCTACGTTTCCACAGATCTTCATTAAGGGAGAGTTCATTGGCGG
EST: gi|164010515|gb|ES151611.1|ES151611
EST:     GACCAAGAGTTGAAAAACGCTGTGAAATCCTTCAG                         CCACTGGCCTTACGTTTCCACAGATCTTCATTAAGGGAGAGTTCATTGGCG
genomic: GACCAAGAGTTGAAAAACGCTGTGAAATCCTTCAGgtgagtatgt ... ttctttgcagCCACTGGCC-TACGTTTCCACAGATCTTCATTAAGGGAGAGTTCATTGGCG
EST: gi|19874734|gb|AU235565.1|AU235565
EST:     AGAAACATTCTAGAAGACCAAGAGTTGAAAAACGCTGTGAAATCCTTCAG                         CCACTGGCCTACGTTTCCACAGATCTTCATTAAGGGAGAGTTCATTGGCGG
genomic: AGAAACATTCTAGAAGACCAAGAGTTGAAAAACGCTGTGAAATCCTTCAGgtgagtatgt ... ttctttgcagCCACTGGCCTACGTTTCCACAGATCTTCATTAAGGGAGAGTTCATTGGCGG
EST: gi|125275867|gb|EL289952.1|EL289952
EST:     AGAAACATTCTAGAAGACCAAGAGTTGAAAAACGCTGTGAAATCCTTCAG                         CCACTGGCCTACGTTTCCACAGATCTTCATTAAGGGAGAGTTCATTGGCGG
genomic: AGAAACATTCTAGAAGACCAAGAGTTGAAAAACGCTGTGAAATCCTTCAGgtgagtatgt ... ttctttgcagCCACTGGCCTACGTTTCCACAGATCTTCATTAAGGGAGAGTTCATTGGCGG
EST: gi|86079164|gb|DR374921.1|DR374921
EST:     AGAAACATTCTAGAAGACCAAGAGTTGAAAAACGCTGTGAAATCCTTCAG                         CCACTGGCCTACGTTTCCACAGATCTTCATTAAGGGAGAGTTCATTGGCGG
genomic: AGAAACATTCTAGAAGACCAAGAGTTGAAAAACGCTGTGAAATCCTTCAGgtgagtatgt ... ttctttgcagCCACTGGCCTACGTTTCCACAGATCTTCATTAAGGGAGAGTTCATTGGCGG
EST: gi|86081518|gb|DR377275.1|DR377275
EST:     AGAAACATTCTAGAAGACCAAGAGTTGAAAAACGCTGTGAAATCCTTCAG                         CCACTGGCCTACGTTTCCACAGATCTTCATTAAGGGAGAGTTCATTGGCGG
genomic: AGAAACATTCTAGAAGACCAAGAGTTGAAAAACGCTGTGAAATCCTTCAGgtgagtatgt ... ttctttgcagCCACTGGCCTACGTTTCCACAGATCTTCATTAAGGGAGAGTTCATTGGCGG
EST: gi|19740939|gb|AU226292.1|AU226292
EST:     GAAACATTCTAGAAGACCAAGAGGTTGAAAAACGCTGTGAAATCCTTCAG                         CCACTGGCCTACGTTTCCACAGATCTTCATTAAGGGAGAGTTCATTGGCGG
genomic: GAAACATTCTAGAAGACCAAGA-GTTGAAAAACGCTGTGAAATCCTTCAGgtgagtatgt ... ttctttgcagCCACTGGCCTACGTTTCCACAGATCTTCATTAAGGGAGAGTTCATTGGCGG
EST: gi|125261988|gb|EL276073.1|EL276073
EST:     AGAAACATTCTAGAAGACCAAGAGTTGAAAAACGCTGTGAAATCCTTCAG                         CCACTGGCCTACGTTTC
genomic: AGAAACATTCTAGAAGACCAAGAGTTGAAAAACGCTGTGAAATCCTTCAGgtgagtatgt ... ttctttgcagCCACTGGCCTACGTTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgacctatatgatctagacctccctttgattttcaagtctttatttctttgcagCCACTGGCCTACGTTTCCACAGATCTTCATTAAGGGAGAGTTCATTGGCGGCTCAGACATCATCCTTAACATGCACAAG
                                      tctttatttctttgc  CT-rich tract
                                        tttatttcttt  TA-rich tract