1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtatcatctttgtttacatttatttgctactctcatttagagactagtgcagtttcctcatgagaaaacggcctacttgttactatgtgaagATGAAGAGAAAATGGAGTTTGAATCGAAGAAGTTACAGAGCTTAGTGAAGGAAAAAGCTCTGTTTATATCGGAACTAGGGGCTCTTGCTGATGGTATTTC
species | Arabidopsis thaliana |
transcript | AT3G15351.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TC-TTTTGCTGCAATTCCGTTTCATGCTGTGCATACAATGCTAGAGAAAG ATGAAGAGAAAAEST: gi|124730910|gb|EH822312.1|EH822312
genomic: TCTTTTTGCTGCAATTCCGTTTCATGCTGTGCATACAATGCTAGAGAAAGgtatcatctt ... ctatgtgaagATGAAGAGAAAA
EST: TCTTTTTGCTGCAATTCCGTTTCATGCTGTGCATACAATGCTAGAGAAAG ATGAAGAGAAAAEST: gi|125062567|gb|EL130865.1|EL130865
genomic: TCTTTTTGCTGCAATTCCGTTTCATGCTGTGCATACAATGCTAGAGAAAGgtatcatctt ... ctatgtgaagATGAAGAGAAAA
EST: ATACAATGCTAGAGAAAG ATGAAGAGAAAATGGAGTTTGAATCGAAGAAGTTACAGAGCTTAGTGAAGG
genomic: ATACAATGCTAGAGAAAGgtatcatctt ... ctatgtgaagATGAAGAGAAAATGGAGTTTGAATCGAAGAAGTTACAGAGCTTAGTGAAGG
tagagactagtgcagtttcctcatgagaaaacggcctacttgttactatgtgaagATGAAGAGAAAATGGAGTTTGAATCGAAGAAGTTACAGAGCTTAGTGAAGGAAAAAGCTCTGTTTATATCGGAACTAGGGGCTCTTGCTGATGGTATTTC
ttactat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatcatctttgtttacatttatttgctactctcatttagagactagtgcagtttcctcatgagaaaacggcctacttgttactatgtgaagATGAAGAGAAAATGGAGTTTGAATCGAAGAAGTTACAGAGCTTAGTGAAGGAAAAAGCTCTGTTTATATCGGAACTAGGGGCTCTTGCTGATGGTATTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT