Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagccccgctagcacttgtagcactaacttaccatatttttttattttgtttgggagacttatgcttaagtatttgcttctctggaacagGCAACTGGCTTGTTACACGGGTCCAACTG

Basic information

species Arabidopsis thaliana
transcript AT3G13320.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125158788|gb|EL187212.1|EL187212
EST:     ATATGCCACAGA                         GCAACTGGCTTGTTACACGGGTCCAACTG
genomic: ATATGCCACAGAgtaagccccg ... tctggaacagGCAACTGGCTTGTTACACGGGTCCAACTG
EST: gi|124865697|gb|EH950134.1|EH950134
EST:     ACGTTAGTAGGCATTACACCATTGGCTGAACGTCTAGGATATGCCACAGA                         GCAACTGGCTTGTTACACGGGTCCAACTG
genomic: ACGTTAGTAGGCATTACACCATTGGCTGAACGTCTAGGATATGCCACAGAgtaagccccg ... tctggaacagGCAACTGGCTTGTTACACGGGTCCAACTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttttttattttgtttgggagacttatgcttaagtatttgcttctctggaacagGCAACTGGCTTGTTACACGGGTCCAACTG
                                     tttgcttctct  CT-rich tract
     tttattttgttt  TA-rich tract