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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaatcatgattcacaattgatttctttttggactttgcaacacaactgtttcgttctgtatactgatcatttgtgctatagGTCACCGAGGAAGATATTGAAGAGTTTGAGGCCAACTATAGGGGTTCTGAATCCGAGAAGAATGATTTGATTGAGCTATATAACAAGTTTAAGGGTAAAA

Basic information

species Arabidopsis thaliana
transcript AT3G12170.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G12170.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA02G31080.1 (Glycine max), 3'ss of exon 4
gtaagaatcatgattcacaattgatttctttttggactttgcaacacaactgtttcgttctgtatactgatcatttgtgcta-tagGTCACCGAGGAAGATATTGAAGAGTTTGAGGCCAACTATAGGGGTTCTGAATCCGAGAAGAATGATTTGATTGAGCTATATAACAAGTTTAAGGGTAAAA
|||| |       ||        | | | || |||  | | |    || |||| | | |   |||| || | || | ||||| |||||||| || |  |||||||| |||||||| || ||||||||||| ||||| || ||||| |||||||||||||| || || || ||||  |||||||| |
gtaacatgatccctttttctcccaatgccttatgg--tatacttgtcatctgtgtagctg-atatattg-taatatatgctaatagGTCACTGAAGCTGATATTGAGGAGTTTGAAGCAAACTATAGGGGGTCTGACTCTGAGAAAAATGATTTGATTGATCTGTACAAGAAGTGCAAGGGTAATA

upper sequence: AT3G12170.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA19G32480.1 (Glycine max), 3'ss of exon 4
------gtaagaat-catgattcacaattgatttctttttggact-ttgcaacacaactgtttcgttctgtatactgatcatt-tgtgctatagGTCACCGAGGAAGATATTGAAGAGTTTGAGGCCAACTATAGGGGTTCTGAATCCGAGAAGAATGATTTGATTGAGCTATATAACAAGTTTAAGGGTAAAA
      ||   |||  |||||  |   |    |  ||| |   |  |||    | |  ||| |   | | | |  || | |   ||||||| |||| || || |  |||||||| |||||||| || |||||| |||| ||||| || ||||| ||||||||||||||  | || || ||||  |||||||| |
gtatttgttttaatatatgatatatggtattctgttttctaatccattgtggtatatttgtgttcatttatgtggtgcttaaaatgtgctacagGTGACTGAAGCTGATATTGAGGAGTTTGAAGCAAACTATCGGGGATCTGACTCAGAGAAAAATGATTTGATTGATTTGTACAAGAAGTGCAAGGGTAACA

upper sequence: AT3G12170.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: Vv08s0007g07960.t01 (Vitis vinifera), 3'ss of exon 4
-----------------------gtaagaatcatgattcacaattgatttctttttggactttgcaacacaactgtttcgttctgtatactgatcatttgtgctatagGTCACCGAGGAAGATATTGAAGAGTTTGAGGCCAACTATAGGGGTTCTGAATCCGAGAAGAATGATTTGATTGAGCTATATAACAAGTTTAAGGGTAAAA
                       | || | |  |||||  ||  | ||     | |  | |||   ||   |  | |    | || | |||   |||| ||     |||| || |||| |||||||||||||||||| || ||||| || || ||||| || |||||||||||||||||||| || || || ||||  |||||||| |
gtcatatcattttgccttattatggaaaatttctgattt-cacgtaatcctcctatttattttcagactggaaagatgacatgtgaacacttg-cattggta--gcagGTTACTGAGGCAGATATTGAAGAGTTTGAAGCAAACTACAGAGGATCTGATTCAGAGAAGAATGATTTGATTGACCTGTACAAAAAGTGCAAGGGTAATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttggactttgcaacacaactgtttcgttctgtatactgatcatttgtgctatagGTCACCGAGGAAGATATTGAAGAGTTTGAGGCCAACTATAGGGGTTCTGAATCCGAGAAGAATGATTTGATTGAGCTATATAACAAGTTTAAGGGTAAAA
                                  tactgat  putative branch site (score: 2)
                                       atcattt  TA-rich tract