Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggttttgtgaattcttttactgtaaagtacaatggagtgtttcctggttatcatgccatgtcattgatatatggtattgattttggtactcgatatgcagGCAGGGCCATCAGGTGCTGATGTGGAAATTGCAGACTGGTTGCGGAAGTACTACTCACATAAGTATATCATTCTCGCGGTGAACAAGTGTGAATCGCCAC

Basic information

species Arabidopsis thaliana
transcript AT3G12080.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124715544|gb|EH806946.1|EH806946
EST:     TCGTTGTCGATGGCCAG                         GCAGGGCCATCAGGTGCTGATGTGGAAATTGCAGACTGGTTGCGGAAGTAC
genomic: TCGTTGTCGATGGCCAGgttctgtgct ... cgatatgcagGCAGGGCCATCAGGTGCTGATGTGGAAATTGCAGACTGGTTGCGGAAGTAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggttatcatgccatgtcattgatatatggtattgattttggtactcgatatgcagGCAGGGCCATCAGGTGCTGATGTGGAAATTGCAGACTGGTTGCGGAAGTACTACTCACATAAGTATATCATTCTCGCGGTGAACAAGTGTGAATCGCCAC
                             tattgat  putative branch site (score: 3)
                 attgatatat  TA-rich tract