1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagaactcctctatttgttatggtaacttaagctgccacaccaagtaaaaaagctcatgtctattcttctgtttcagTGGGCTCGAAGTCCGGGGAAAAAGGGTTCTCATTACCATCCAGACAGTGACTTGTTCCTCCCTAAAGAGAGAAAGGATGTCCTCACTTCTACTGCTTGTT
species | Arabidopsis thaliana |
transcript | AT3G11170.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCTTTAGATTTACACTGCCTCTCGTGATGCTTGCATACCCTTTCTACTTG TGGGCTCGAAGTCCGGGGAAAAAGGGTTCTCATTACCATCCAGACAGTGACEST: gi|125233958|gb|EL248043.1|EL248043
genomic: TCTTTAGATTTACACTGCCTCTCGTGATGCTTGCATACCCTTTCTACTTGgtaagaactc ... tctgtttcagTGGGCTCGAAGTCCGGGGAAAAAGGGTTCTCATTACCATCCAGACAGTGAC
EST: TCTTTAGACTTACACTGCCTCTCGTGATGCTTGCATACCCTTTCTACTTG TGGGCTCGAAGTCCGGGGAAAAAGGGTTCTCATTACCATCCAGAEST: gi|124839720|gb|EH924159.1|EH924159
genomic: TCTTTAGATTTACACTGCCTCTCGTGATGCTTGCATACCCTTTCTACTTGgtaagaactc ... tctgtttcagTGGGCTCGAAGTCCGGGGAAAAAGGGTTCTCATTACCATCCAGA
EST: ATTTACACTGCCTCTCGTGATGCTTGCATACCCTTTCTACTTG TGGGCTCGAAGTCCGGGGAAAAAGGGTTCTCATTACCATCCAGACAGTGACEST: gi|125136142|gb|EL176172.1|EL176172
genomic: ATTTACACTGCCTCTCGTGATGCTTGCATACCCTTTCTACTTGgtaagaactc ... tctgtttcagTGGGCTCGAAGTCCGGGGAAAAAGGGTTCTCATTACCATCCAGACAGTGAC
EST: TCTTTAGATTTACACTGCCTCTCGTGATGCTTGCATACCCTTTCTACTTG TGGGCTCGAAGTCCGGGGAAAAAGGGTTCTCATTACCATCCAGACAGTGAEST: gi|124958789|gb|EL033508.1|EL033508
genomic: TCTTTAGATTTACACTGCCTCTCGTGATGCTTGCATACCCTTTCTACTTGgtaagaactc ... tctgtttcagTGGGCTCGAAGTCCGGGGAAAAAGGGTTCTCATTACCATCCAGACAGTGA
EST: CCTCTCGTGATGCTTGCATACCCTTTCTACTTG TGGGCTCGAAGTCCGGGGAAAAAGGGTTCTCATTACCATCCAGACAGTGACEST: gi|124965690|gb|EL039857.1|EL039857
genomic: CCTCTCGTGATGCTTGCATACCCTTTCTACTTGgtaagaactc ... tctgtttcagTGGGCTCGAAGTCCGGGGAAAAAGGGTTCTCATTACCATCCAGACAGTGAC
EST: TCTTTAGATTTACACTGCCTCTCGTGATGCTTGCATACCCTTTCTACTTG TGGGCTCGAAGTCCGGGGAAAAAGGGTTCTEST: gi|125043481|gb|EL115750.1|EL115750
genomic: TCTTTAGATTTACACTGCCTCTCGTGATGCTTGCATACCCTTTCTACTTGgtaagaactc ... tctgtttcagTGGGCTCGAAGTCCGGGGAAAAAGGGTTCT
EST: CTGCCTCTCGTGATGCTTGCATACCCTTTCTACTTG TGGGCTCGAAGTCCGGGGAAAAAGGGTTCTCATTACCATCCAGAACAGTGAEST: gi|124942171|gb|EL018460.1|EL018460
genomic: CTGCCTCTCGTGATGCTTGCATACCCTTTCTACTTGgtaagaactc ... tctgtttcagTGGGCTCGAAGTCCGGGGAAAAAGGGTTCTCATTACCATCCAGA-CAGTGA
EST: CCTCTCGTGATGCTTGCATACCCTTTCTACTTG TGGGCTCGAAGTCCGGGGAAAAAGGGTTCTCATTACCATCCAGACAGTGACEST: gi|124888514|gb|EH967416.1|EH967416
genomic: CCTCTCGTGATGCTTGCATACCCTTTCTACTTGgtaagaactc ... tctgtttcagTGGGCTCGAAGTCCGGGGAAAAAGGGTTCTCATTACCATCCAGACAGTGAC
EST: TCTTTAGATTTACACTGCCTCTCGTGATGCTTGCATACCCTTTCTACTTG TGGGCTCGAAGTCCGGGGAAAAAGGGTTCTCATTACCATCCAG
genomic: TCTTTAGATTTACACTGCCTCTCGTGATGCTTGCATACCCTTTCTACTTGgtaagaactc ... tctgtttcagTGGGCTCGAAGTCCGGGGAAAAAGGGTTCTCATTACCATCCAG
gtaacttaagctgccacaccaagtaaaaaagctcatgtctattcttctgtttcagTGGGCTCGAAGTCCGGGGAAAAAGGGTTCTCATTACCATCCAGACAGTGACTTGTTCCTCCCTAAAGAGAGAAAGGATGTCCTCACTTCTACTGCTTGTT
tggtaac putative branch site (score: 2)
tctattcttctgtttc putative PPT
aagtaaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaactcctctatttgttatggtaacttaagctgccacaccaagtaaaaaagctcatgtctattcttctgtttcagTGGGCTCGAAGTCCGGGGAAAAAGGGTTCTCATTACCATCCAGACAGTGACTTGTTCCTCCCTAAAGAGAGAAAGGATGTCCTCACTTCTACTGCTTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG