1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaacttatccatgatcaggaatgcgctattgaatatgttcaaaagatttcttggtactcatgaacatctgtgagaataatgggttttaaagaaaaagagtttgtttcggttggtgcagGATCCATTAGTGACAAAAGGAGGAAGCTTGGTACCTCTGGTGGGTATAGATGTTTGGGAGCACGCCTACTACTTGCAG
species | Arabidopsis thaliana |
transcript | AT3G10920.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GACTAGACAAAGAACTGAAGAAGCTAGTTGTTGACACAACTGCCAATCAG GATCCATTAGTGACAAAAGGAGGAAGCTTGGEST: gi|164015850|gb|ES155021.1|ES155021
genomic: GACTAGACAAAGAACTGAAGAAGCTAGTTGTTGACACAACTGCCAATCAGgtaacttatc ... gttggtgcagGATCCATTAGTGACAAAAGGAGGAAGCTTGG
EST: GTTGTTGACACAACTGCCAATCAG GATCCATTAGTGACAAAAGGAGGAAGCTTGGTACCTCTGGTGGGTATAGATEST: gi|125021953|gb|EL094222.1|EL094222
genomic: GTTGTTGACACAACTGCCAATCAGgtaacttatc ... gttggtgcagGATCCATTAGTGACAAAAGGAGGAAGCTTGGTACCTCTGGTGGGTATAGAT
EST: TTGTTGACACAACTGCCAATCAG GATCCATTAGTGACAAAAGGAGGAAGCTTGGTACCTCTGGTGGGTATGGATEST: gi|124980171|gb|EL053144.1|EL053144
genomic: TTGTTGACACAACTGCCAATCAGgtaacttatc ... gttggtgcagGATCCATTAGTGACAAAAGGAGGAAGCTTGGTACCTCTGGTGGGTATAGAT
EST: GAAGCTAGTTGTTGACACAACTGCCAATTCAG GATCCATTAGTGACAAAAGGAGGAAGCTTGGTACCTCTGGTGGGTATAGAEST: gi|116426619|gb|EG469211.1|EG469211
genomic: GAAGCTAGTTGTTGACACAACTGCCAA-TCAGgtaacttatc ... gttggtgcagGATCCATTAGTGACAAAAGGAGGAAGCTTGGTACCTCTGGTGGGTATAGA
EST: GACTAGACAAAGAACTGAAGAAGCTAGTTGTTGACACAACTGCCAATCAG GATCCATTAGTGACAAAAGGAGGAAGCTTGGTACCTCTGGTGGGTATAGATEST: gi|47828007|gb|CK117691.1|CK117691
genomic: GACTAGACAAAGAACTGAAGAAGCTAGTTGTTGACACAACTGCCAATCAGgtaacttatc ... gttggtgcagGATCCATTAGTGACAAAAGGAGGAAGCTTGGTACCTCTGGTGGGTATAGAT
EST: GACTAGACAAAGAACTGAAGAAGCTAGTTGTTGACACAACTGCCAATCAG GATCCATTAGTGACAAAAGGAGGAAGCTTGGTACCTCTGGTGGGTATAGAT
genomic: GACTAGACAAAGAACTGAAGAAGCTAGTTGTTGACACAACTGCCAATCAGgtaacttatc ... gttggtgcagGATCCATTAGTGACAAAAGGAGGAAGCTTGGTACCTCTGGTGGGTATAGAT
acatctgtgagaataatgggttttaaagaaaaagagtttgtttcggttggtgcagGATCCATTAGTGACAAAAGGAGGAAGCTTGGTACCTCTGGTGGGTATAGATGTTTGGGAGCACGCCTACTACTTGCAG
ttttaaagaaaaaga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacttatccatgatcaggaatgcgctattgaatatgttcaaaagatttcttggtactcatgaacatctgtgagaataatgggttttaaagaaaaagagtttgtttcggttggtgcagGATCCATTAGTGACAAAAGGAGGAAGCTTGGTACCTCTGGTGGGTATAGATGTTTGGGAGCACGCCTACTACTTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA