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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgtcaaattgtgaacactttacagctcggttttttgtttccctcggtgtcaagagcatgggtttagctgtttattcattttctatcttctgttagAATATTGAAGAAGGAAAGAAGTACAAGGTGGCTCTTTATGTGCGTTCGACTGGTGATATCGATTTGTCTGTGTCGTTGACGAGCTCGAATGGATCACGGA

Basic information

species Arabidopsis thaliana
transcript AT3G10740.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116444622|gb|EG487214.1|EG487214
EST:     GTTGTCCATCGGGAGGTGTCGGAGTTTATAACCCTGGTTACTGGGGCATG                         AGTATTGAAGAAG-AAAGAAGTACAAG-TGGCTCTTTATGTGCGTTCGACT
genomic: GTTGTCCATCGGGAGGTGTCGGAGTTTATAACCCTGGTTACTGGGGCATGgtgagtgtca ... cttctgttagAATATTGAAGAAGGAAAGAAGTACAAGGTGGCTCTTTATGTGCGTTCGACT
EST: gi|125042208|gb|EL114477.1|EL114477
EST:     GTTGTCCATCGGGAGGTGTCGGAGTTTATAACCCTGGTTACTGGGGCATG                         AATATTGAAGAAGGAAAGAAGTAC
genomic: GTTGTCCATCGGGAGGTGTCGGAGTTTATAACCCTGGTTACTGGGGCATGgtgagtgtca ... cttctgttagAATATTGAAGAAGGAAAGAAGTAC
EST: gi|125277169|gb|EL291254.1|EL291254
EST:     ATAACCCTGGTTACTGGGGCATG                         AATATTGAAGAAGGAAAGAAGTACAAGGTGGCTCTTTATGTGCGTTCGACT
genomic: ATAACCCTGGTTACTGGGGCATGgtgagtgtca ... cttctgttagAATATTGAAGAAGGAAAGAAGTACAAGGTGGCTCTTTATGTGCGTTCGACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctcggtgtcaagagcatgggtttagctgtttattcattttctatcttctgttagAATATTGAAGAAGGAAAGAAGTACAAGGTGGCTCTTTATGTGCGTTCGACTGGTGATATCGATTTGTCTGTGTCGTTGACGAGCTCGAATGGATCACGGA
                             tttattcattttctat  CT-rich tract
                             tttattcattttctat  TA-rich tract