1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' |
...cccgatatatgtacttacttttttttcattttggcttacttaaaagaaactgcttttctgatgtgaaaatggtgaccctgcctcttgaaaccttgaacagGTTCCATCTCGTATTGAGAAGCTCATTGCTGATAAGCAGTTTTACGCTGCTATTCAAGTGTATCTCCAGTCGTCTCTAATGCTGGAGCGTGAGGGGCTTC
species | Arabidopsis thaliana |
transcript | AT3G10380.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CATTGCGGCACATCATCTCACTTTTGGATCAAATCGAGGGCATTGCCAAG GTTCCATCTCGTATTGAGAAGCTCATTGCTGATAAGCAGTTTTACGCTGCTEST: gi|19878577|gb|AU239408.1|AU239408
genomic: CATTGCGGCACATCATCTCACTTTTGGATCAAATCGAGGGCATTGCCAAGgttggttgga ... ccttgaacagGTTCCATCTCGTATTGAGAAGCTCATTGCTGATAAGCAGTTTTACGCTGCT
EST: CATTGCGGCACATCATCTCACTTTTGGATCAAATCGAGGGCATTGNCAAG GGTCCATCTCGTATTGAGAAGCTCATTGCTGATAAGCAGNTTTACGCTEST: gi|125262581|gb|EL276666.1|EL276666
genomic: CATTGCGGCACATCATCTCACTTTTGGATCAAATCGAGGGCATTGCCAAGgttggttgga ... ccttgaacagGTTCCATCTCGTATTGAGAAGCTCATTGCTGATAAGCAGTTTTACGCT
EST: TTTTGGATCAAATCGAGGGCATTGCCAAG GTTCCATCTCGTATTGAGAAGCTCATTGCTGATAAGCAGTTTTACGCTGCTEST: gi|116414055|gb|EG456647.1|EG456647
genomic: TTTTGGATCAAATCGAGGGCATTGCCAAGgttggttgga ... ccttgaacagGTTCCATCTCGTATTGAGAAGCTCATTGCTGATAAGCAGTTTTACGCTGCT
EST: CATTGCGGCACATCATCTCACTTTTGGATCAAATCGAGGGCATTGCCAAG GTTCCATCTCGTATTGAGAAGCTCATTGCTGATAAGCAGTTTTACGCTGCT
genomic: CATTGCGGCACATCATCTCACTTTTGGATCAAATCGAGGGCATTGCCAAGgttggttgga ... ccttgaacagGTTCCATCTCGTATTGAGAAGCTCATTGCTGATAAGCAGTTTTACGCTGCT
gaaactgcttttctgatgtgaaaatggtgaccctgcctcttgaaaccttgaacagGTTCCATCTCGTATTGAGAAGCTCATTGCTGATAAGCAGTTTTACGCTGCTATTCAAGTGTATCTCCAGTCGTCTCTAATGCTGGAGCGTGAGGGGCTTC
ttctgat putative branch site (score: 3)
tgaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cccgatatatgtacttacttttttttcattttggcttacttaaaagaaactgcttttctgatgtgaaaatggtgaccctgcctcttgaaaccttgaacagGTTCCATCTCGTATTGAGAAGCTCATTGCTGATAAGCAGTTTTACGCTGCTATTCAAGTGTATCTCCAGTCGTCTCTAATGCTGGAGCGTGAGGGGCTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - -attttgg
- - - - - - - - - - - - - - - - - - - - -aaaagaa
- - - - - - - - - - - - - - - - - - - - - - - - -ctgcttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaatg