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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagggtactgtaaaatatagcagaaatttgttaaagttgtgtgatcattgctcatcagtaatttgctttcagCATGGCGGAAGATGCAGTTGATGCAGCAATCAAATCGGGACAACTTAAGCCAACCAATGAATGTGTAACGCAGAAACTACAGCTTCTGGGTTCTTATGGA

Basic information

species Arabidopsis thaliana
transcript AT3G10370.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G10370.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: Vv13s0019g04730.t01 (Vitis vinifera), 3'ss of exon 4
-----------------gtgagggtactgtaa------aatatagcagaaat----ttgttaaagttgtgtgatcat-tgctcatcagtaatttgctttcagCATGGCGGAAGATGCAGTTGATGCAGCAATCAAATCGGGACAACTTAAGCCAACCAATGAATGTGTAACGCAGAAACTACAGCTTCTGGGTTCTTATGGA
                  | ||| | ||||||      ||| || |   | |    |||||  |  ||  ||| ||| | || |  || |      |||||||||||| |||||||||||||||||||| || || || ||| | || |  || |||||||||||  | ||  | ||  |||| |||   ||   | | |  
tttgaatcaacttacatcttaggcttctgtaatctatcaatctatcctcattatgcttgttttacatgcatgagcatgtacttacgagaa--ccagtttcagCATGGCAGAAGATGCAGTTGATGCAGCTATAAAGTCTGGAAAGCTGAGTCCGACCAATGAATGCTTGACAAATAACTTACACCTTTCTGGAAGTGAAGAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124863228|gb|EH947665.1|EH947665
EST:     CGGGTGGAAAGTGGACAACTTATCGAAG                         CATGGCGGAAGATGCAGTTGATGCAGCAATCAAATCGGG
genomic: CGGGTGGAAAGTGGACAACTTATCGAAGgtgagggtac ... ttgctttcagCATGGCGGAAGATGCAGTTGATGCAGCAATCAAATCGGG
EST: gi|116483431|gb|EG526023.1|EG526023
EST:     AATCCTGGTCTGGTTACAATCACGGGTGGAAAGTGGACAACTTATCGAAG                         CATGGCGGAAGATGCAGTTGATGCAGCAATCAAATCGGGACAACTTAAGCC
genomic: AATCCTGGTCTGGTTACAATCACGGGTGGAAAGTGGACAACTTATCGAAGgtgagggtac ... ttgctttcagCATGGCGGAAGATGCAGTTGATGCAGCAATCAAATCGGGACAACTTAAGCC
EST: gi|116483425|gb|EG526017.1|EG526017
EST:     AATCCTGGTCTGGTTACAATCACGGGTGGAAAGTGGACAACTTATCGAAG                         CATGGCGGAAGATGCAGTTGATGCAGCAATCAAATCGGGACAACTTAAGCC
genomic: AATCCTGGTCTGGTTACAATCACGGGTGGAAAGTGGACAACTTATCGAAGgtgagggtac ... ttgctttcagCATGGCGGAAGATGCAGTTGATGCAGCAATCAAATCGGGACAACTTAAGCC
EST: gi|116483421|gb|EG526013.1|EG526013
EST:     AATCCTGGTCTGGTTACAATCACGGGTGGAAAGTGGACAACTTATCGAAG                         CATGGCGGAAGATGCAGTTGATGCAGCAATCAAATCGGGACAACTTAAGCC
genomic: AATCCTGGTCTGGTTACAATCACGGGTGGAAAGTGGACAACTTATCGAAGgtgagggtac ... ttgctttcagCATGGCGGAAGATGCAGTTGATGCAGCAATCAAATCGGGACAACTTAAGCC
EST: gi|116483428|gb|EG526020.1|EG526020
EST:     AATCCTGGTCTGGTTACAATCACGGGTGGAAAGTGGACAACTTATCGAAG                         CATGGCGGAAGATGCAGTTGATGCAGCAATCAAATCGGGACAACTTAAGCC
genomic: AATCCTGGTCTGGTTACAATCACGGGTGGAAAGTGGACAACTTATCGAAGgtgagggtac ... ttgctttcagCATGGCGGAAGATGCAGTTGATGCAGCAATCAAATCGGGACAACTTAAGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagcagaaatttgttaaagttgtgtgatcattgctcatcagtaatttgctttcagCATGGCGGAAGATGCAGTTGATGCAGCAATCAAATCGGGACAACTTAAGCCAACCAATGAATGTGTAACGCAGAAACTACAGCTTCTGGGTTCTTATGGA
                                            tttgctttc  CT-rich tract
      aaatttgttaaagtt  TA-rich tract