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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgttttgtttatgtcttctccgagaaatctctgtgatttcacttgcaatatatttggtgatctgagatattcaaattttacagGGATTGATCTAATTGTGGGCACAGAGATAGTCAAAGCAGATCTTGCTTCAAAGACACTTGTTAGTGATGATGGCAAAATTTACAAGTACCAAACTTTGCT

Basic information

species Arabidopsis thaliana
transcript AT3G09940.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116470475|gb|EG513067.1|EG513067
EST:     TGCTGGAACTGGAGAAGCGAAGCAGTACCCTAACTGGTACAAAGAGAAAG                         GGATTGATCTAATTGTGGGCACAGAGATAGTCAAAGCAGATCTTGCTTCAA
genomic: TGCTGGAACTGGAGAAGCGAAGCAGTACCCTAACTGGTACAAAGAGAAAGgtaatgtttt ... aattttacagGGATTGATCTAATTGTGGGCACAGAGATAGTCAAAGCAGATCTTGCTTCAA
EST: gi|116470473|gb|EG513065.1|EG513065
EST:     TGCTGGAACTGGAGAAGCGAAGCAGTACCCTAACTGGTACAAAGAGAAAG                         GGATTGATCTAATTGTGGGCACAGAGATAGTCAAAGCAGATCTTGCTTCAA
genomic: TGCTGGAACTGGAGAAGCGAAGCAGTACCCTAACTGGTACAAAGAGAAAGgtaatgtttt ... aattttacagGGATTGATCTAATTGTGGGCACAGAGATAGTCAAAGCAGATCTTGCTTCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctctgtgatttcacttgcaatatatttggtgatctgagatattcaaattttacagGGATTGATCTAATTGTGGGCACAGAGATAGTCAAAGCAGATCTTGCTTCAAAGACACTTGTTAGTGATGATGGCAAAATTTACAAGTACCAAACTTTGCT
                                    agatattcaaatttta  TA-rich tract