1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaagtaactcatactctgtatacccatacatagtttcccttgtctctctttcaaaatcttaaaatatgtttgtgtgactttgtgcagGATTTTAGCTCATCATGGGACATTAAGGCGACACCAACCTTCTTCTTCCTAAAGAATGGACAACAAATAGGCAAGCTTGTTGGAGCAAACAAACCGGAGC
species | Arabidopsis thaliana |
transcript | AT3G08710.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGAAACATTCTTCTCTTATGTTCCTTCTTGTAGATGTTGATGAACTCAGC GATTTTAGCTCATCATGGGACATTAAGGCGACACCAACCTTCTTCTTCCTAEST: gi|164235896|gb|ES038647.1|ES038647
genomic: AGAAACATTCTTCTCTTATGTTCCTTCTTGTAGATGTTGATGAACTCAGCgtaagtaact ... ctttgtgcagGATTTTAGCTCATCATGGGACATTAAGGCGACACCAACCTTCTTCTTCCTA
EST: CTTCTCTTATGTTCCTTCTTGTAGATGTTGATGAACTCAGC GATTTTAGCTCATCATGGGACATTAAGGCGACACCAACCTTCTTCTTCCTA
genomic: CTTCTCTTATGTTCCTTCTTGTAGATGTTGATGAACTCAGCgtaagtaact ... ctttgtgcagGATTTTAGCTCATCATGGGACATTAAGGCGACACCAACCTTCTTCTTCCTA
gtttcccttgtctctctttcaaaatcttaaaatatgtttgtgtgactttgtgcagGATTTTAGCTCATCATGGGACATTAAGGCGACACCAACCTTCTTCTTCCTAAAGAATGGACAACAAATAGGCAAGCTTGTTGGAGCAAACAAACCGGAGC
tttcaaaatcttaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtaactcatactctgtatacccatacatagtttcccttgtctctctttcaaaatcttaaaatatgtttgtgtgactttgtgcagGATTTTAGCTCATCATGGGACATTAAGGCGACACCAACCTTCTTCTTCCTAAAGAATGGACAACAAATAGGCAAGCTTGTTGGAGCAAACAAACCGGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA