1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gtttaatatttaccactgaatatgataaatcctctctactttgttatatttcattattatccactctataataacgtgttctttgttttctcctggctagATATATGCCCTTTGCTGGTTTTCATGGTGTCTTGGCAGGCCTTCTTGTAGGGATAAAGCAGATAATACCTGACCAGGAGATATTGCTGTTAAAGATAAAA
species | Arabidopsis thaliana |
transcript | AT3G07950.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTCGTTACAGCCATTGCCTTATACTACATAACGAGGCTGGAAGTTTACCT ATATATGCCCTTTGCTGGTTTTCATGGTGTCTTGGCAGGCCTTCTTGTACGEST: gi|163969010|gb|ES008060.1|ES008060
genomic: TTCGTTACAGCCATTGCCTTATACTACATAACGAGGCTGGAAGTTTACCTgtaagtaacc ... tcctggctagATATATGCCCTTTGCTGGTTTTCATGGTGTCTTGGCAGGCCTTCTTGTAGG
EST: AGCCATTGCCTTATACTACATAACGAGGCTGGAAGTTTACCT ATATATGCCCTTTGCTGGTTTTCATGGTGTCTTGGCAGGCCTTCTTGTAGGEST: gi|125192972|gb|EL207926.1|EL207926
genomic: AGCCATTGCCTTATACTACATAACGAGGCTGGAAGTTTACCTgtaagtaacc ... tcctggctagATATATGCCCTTTGCTGGTTTTCATGGTGTCTTGGCAGGCCTTCTTGTAGG
EST: TTCGTTACAGCCATTGCCTTATACTACATAACGAGGCTGGAAGTTTACCT ATATATGCCCTTTGCTTGGTTTTCEST: gi|164134655|gb|ES055701.1|ES055701
genomic: TTCGTTACAGCCATTGCCTTATACTACATAACGAGGCTGGAAGTTTACCTgtaagtaacc ... tcctggctagATATATGCCCTTTGCT-GGTTTTC
EST: TTCGTTACAGCCATTGCCTTATACTACATAACGAGGCTGGAAGTTTACCT ATATATGCCCTTTGCTGGTTTTCATGGTGTCTTGGCAGGEST: gi|163984985|gb|ES012222.1|ES012222
genomic: TTCGTTACAGCCATTGCCTTATACTACATAACGAGGCTGGAAGTTTACCTgtaagtaacc ... tcctggctagATATATGCCCTTTGCTGGTTTTCATGGTGTCTTGGCAGG
EST: AGCCATTGCCTTATACTACATAACGAGGCTGGAAGTTTACCT ATATATGCCCTTTGCTGGTTTTCATGGTGTCTTGGCAGGCCTTCTTGTAGGEST: gi|124798913|gb|EH888592.1|EH888592
genomic: AGCCATTGCCTTATACTACATAACGAGGCTGGAAGTTTACCTgtaagtaacc ... tcctggctagATATATGCCCTTTGCTGGTTTTCATGGTGTCTTGGCAGGCCTTCTTGTAGG
EST: TTCGTTACAGCCATTGCCTTATACTACATAACGAGGCTGGAAGTTTACCT ATATATGCCCTTTGCTGGTTTTCATGGTGTCTTGGC
genomic: TTCGTTACAGCCATTGCCTTATACTACATAACGAGGCTGGAAGTTTACCTgtaagtaacc ... tcctggctagATATATGCCCTTTGCTGGTTTTCATGGTGTCTTGGC
atatttcattattatccactctataataacgtgttctttgttttctcctggctagATATATGCCCTTTGCTGGTTTTCATGGTGTCTTGGCAGGCCTTCTTGTAGGGATAAAGCAGATAATACCTGACCAGGAGATATTGCTGTTAAAGATAAAA
taataac putative branch site (score: 1)
tgttctttgttttctc CT-rich tract
tcattattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttaatatttaccactgaatatgataaatcctctctactttgttatatttcattattatccactctataataacgtgttctttgttttctcctggctagATATATGCCCTTTGCTGGTTTTCATGGTGTCTTGGCAGGCCTTCTTGTAGGGATAAAGCAGATAATACCTGACCAGGAGATATTGCTGTTAAAGATAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - -taaatcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccactct