1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtatggaacttctgatgactacagaatgtcttctcatttattatgagagattatgcaattgaaaattttgtgaaaccctgatcttaagatttcgctctaacctgcagGCTGTATGGGCTTTGGGTAACGTTGCTGGTGATTCACCACGGTGCCGTGATCTTGTTCTTGGATGTGGGGCACTGCTTCCGCTGCTCAATCAGCTTAATG
species | Arabidopsis thaliana |
transcript | AT3G06720.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATGATGTTCGTGAACAG GCTGTATGGGCTTTGGGTAACGTTGCTGGTGATTCACCACGGTGCCGTGATEST: gi|116430084|gb|EG472676.1|EG472676
genomic: ATGATGTTCGTGAACAGgtatggaact ... taacctgcagGCTGTATGGGCTTTGGGTAACGTTGCTGGTGATTCACCACGGTGCCGTGAT
EST: CAATCTTTGTTCAGCTTCTTGCTTCCCCTAGCGATGATGTTCGTGAACAG GCTGTATGGGCTTTGGGTAACGTTGCTGGTGATTCACCACGGTGCCGTGATEST: gi|116478693|gb|EG521285.1|EG521285
genomic: CAATCTTTGTTCAGCTTCTTGCTTCCCCTAGCGATGATGTTCGTGAACAGgtatggaact ... taacctgcagGCTGTATGGGCTTTGGGTAACGTTGCTGGTGATTCACCACGGTGCCGTGAT
EST: CAATCTTTGTTCAGCTTCTTGCTTCCCCTAGCGATGATGTTCGTGAACAG GCTGTATGGGCTTTGGGTAACGTTGCTGGTGATTCACCACGGTGCCGTGATEST: gi|116478694|gb|EG521286.1|EG521286
genomic: CAATCTTTGTTCAGCTTCTTGCTTCCCCTAGCGATGATGTTCGTGAACAGgtatggaact ... taacctgcagGCTGTATGGGCTTTGGGTAACGTTGCTGGTGATTCACCACGGTGCCGTGAT
EST: CAATCTTTGTTCAGCTTCTTGCTTCCCCTAGCGATGATGTTCGTGAACAG GCTGTATGGGCTTTGGGTAACGTTGCTGGTGATTCACCACGGTGCCGTGAT
genomic: CAATCTTTGTTCAGCTTCTTGCTTCCCCTAGCGATGATGTTCGTGAACAGgtatggaact ... taacctgcagGCTGTATGGGCTTTGGGTAACGTTGCTGGTGATTCACCACGGTGCCGTGAT
atgcaattgaaaattttgtgaaaccctgatcttaagatttcgctctaacctgcagGCTGTATGGGCTTTGGGTAACGTTGCTGGTGATTCACCACGGTGCCGTGATCTTGTTCTTGGATGTGGGGCACTGCTTCCGCTGCTCAATCAGCTTAATG
ctctaac putative branch site (score: 2)
tttcgctct CT-rich tract
attgaaaattttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggaacttctgatgactacagaatgtcttctcatttattatgagagattatgcaattgaaaattttgtgaaaccctgatcttaagatttcgctctaacctgcagGCTGTATGGGCTTTGGGTAACGTTGCTGGTGATTCACCACGGTGCCGTGATCTTGTTCTTGGATGTGGGGCACTGCTTCCGCTGCTCAATCAGCTTAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT