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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagccctttagataaaagccttacaatcaaaagagtaacatcgtctaagtcagattcttgcttctaacattaggaaatacaaattgaaaattcttgcagGTTGTATGGGATCACAAGTGTTTGTTACCACGCCTTCTATCTTCCTCTTTTGTATGTTACTTTTCTTGCAGACTTTTTCCAG

Basic information

species Arabidopsis thaliana
transcript AT3G05010.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G05010.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: Vv14s0030g00750.t01 (Vitis vinifera), 3'ss of exon 4
gtaagccctttagataaaagccttacaatcaaaagagtaacatcgtctaagtcagattcttgcttctaacattaggaaatacaaattgaaaattcttgcagGTTGTATGGGATCACAAGTGTTTGTTACCACGCCTTCTATCTTCCTCTTTTGTATGTTACTTTTCTTGCAGACTTTTTCCAG
    |   |    |    ||  || | || ||   |  ||  ||       |    || |||  || |        |  |     || |   || ||||||||| |||||  | ||||   |||  ||||| ||||| |||||||| ||| | ||| |||| ||||| |||||||||||||||
----gtattcctcaatctagtttttctatgaagcaaagaatttcactggcat----ttattgagtcgagatactaaattttttctttaattttttttgcagGTTATATGGTCTTACAATGATTTTCTACCATGCCTTTTATCTTCCCCTTCTATATATTACATTTCTAGCAGACTTTTTCCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124887415|gb|EH966317.1|EH966317
EST:     CCCTATTTGCATGTGCTCTTACGGCAAACGGTAGCTCATTTTGGATTATG                         GTTGTATGGGATCACAAGTGTTTGTTACCA
genomic: CCCTATTTGCATGTGCTCTTACGGCAAACGGT-GCTCATTTTGGATTATGgtaagccctt ... attcttgcagGTTGTATGGGATCACAAGTGTTTGTTACCA
EST: gi|125050175|gb|EL122444.1|EL122444
EST:     TCCCTATTTGCATGTGCTCTTACGGCAAACGGTGCTCATTTTGGATTATG                         GTTGTATGGGATCACAA
genomic: TCCCTATTTGCATGTGCTCTTACGGCAAACGGTGCTCATTTTGGATTATGgtaagccctt ... attcttgcagGTTGTATGGGATCACAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctaagtcagattcttgcttctaacattaggaaatacaaattgaaaattcttgcagGTTGTATGGGATCACAAGTGTTTGTTACCACGCCTTCTATCTTCCTCTTTTGTATGTTACTTTTCTTGCAGACTTTTTCCAG
                 ttctaac  putative branch site (score: 1)
                                              ttcttgc  putative PPT
                              aaatacaaattgaaaa  TA-rich tract