Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtatactggttttccctcttgctatcttctgtttttgattgtgactgtagctttaagaatctgttttgatcaatgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAATCTTTATCTTGTGGGTTCTTGTTCTCCATAATCAATCACCTTTTATGTTATTTG

Basic information

species Arabidopsis thaliana
transcript AT3G04920.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G04920.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GRMZM2G029685_T02 (Zea mays), 3'ss of exon 3
gtatgtatactggttttccctcttgctatcttctgtttttgattgtgactgta-gctttaagaatctgttttgatcaatgttt-gcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAATCTTTATCTTGTGGGTTCTTGTTCTCCATAATCAATCACCTTTTATGTTATTTG-
       |||  ||      |  ||||| ||  | ||    |||||    |||   || ||  || | |  ||  |||| ||| ||||||||||||||| |||||||||||||||| ||     ||||  |    | ||    | |   |  |  |   |  |  |   |      |   | |  ||  
------gtaccagtcaggaat--tgcta-ctcgtattccc-attgttctggtacatttcaattatgtttgctgcacaattttttgcagACAAAGGCTGGAGATGCCAAGAAGAAGTAAGGGAG-GAAGTTACTTGCCTTGCTCTTTCTCTCATCATAGGCTTTGGTTTGTTTAGGGTGGGGCTCCTTCC

upper sequence: AT3G04920.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GRMZM2G029685_T01 (Zea mays), 3'ss of exon 3
gtatgtatactggttttccctcttgctatcttctgtttttgattgtgactgta-gctttaagaatctgttttgatcaatgttt-gcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAATCTTTATCTTGTGGGTTCTTGTTCTCCATAATCAATCACCTTTTATGTTATTTG-
   ||  |||  ||      |  ||||| ||  | ||    |||||    |||   || ||  || | |  ||  |||| ||| ||||||||||||||| |||||||||||||||| ||     ||||  |    | ||    | |   |  |  |   |  |  |   |      |   | |  ||  
--gtgagtaccagtcaggaat--tgcta-ctcgtattccc-attgttctggtacatttcaattatgtttgctgcacaattttttgcagACAAAGGCTGGAGATGCCAAGAAGAAGTAAGGGAG-GAAGTTACTTGCCTTGCTCTTTCTCTCATCATAGGCTTTGGTTTGTTTAGGGTGGGGCTCCTTCC

upper sequence: AT3G04920.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GRMZM2G091383_T01 (Zea mays), 3'ss of exon 3
---------------------------------------------------------------------gtatgtatactggttttccctcttgctatcttctgtttttgattgtgactgtagctttaagaatctgttttgatcaatgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAATCTTTATC-TTGTGGGTTCTTGTTCTCCATAATCAATCACCTTTTATGTTATTTG
                                                                      | ||| |    | ||    |      ||  |   ||||||  ||| ||||    |||     | |  || |||   | |||||||||||||||||| || ||||||||||| ||||         || | |  ||   | |  || ||||  ||    | |  ||   |  |    || || |   
gtatgcgcacttgcattcatctgactgttgtgtctaatattactgcgcatttggaatgtggggatttcattgtgtttctgtggttctgataaaaaaatagttattttttgcgtgtaactgctaattt-----ttttgttggattggt-tttgcagACAAAGGCTGGGGACGCCAAGAAGAAATGAGCAAGGTTTCAGTGTACTTTAGCCGTCTTGAGTTCGAGTAACACCTGTTCG-CCGTCAGAAATTTTGTACC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86045455|gb|DR341210.1|DR341210
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAGAAGAGAGATCCTGAAGAGATAACCTTT
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAATCTTT
EST: gi|86045413|gb|DR341168.1|DR341168
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAACCTTT
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAATCTTT
EST: gi|86045506|gb|DR341261.1|DR341261
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAA
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAA
EST: gi|125064414|gb|EL132045.1|EL132045
EST:     GTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAATCTTT
genomic: GTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAATCTTT
EST: gi|86045480|gb|DR341235.1|DR341235
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAAGAGAGAA
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAA-GAGAGAA
EST: gi|86045433|gb|DR341188.1|DR341188
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGA
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGA
EST: gi|86045513|gb|DR341268.1|DR341268
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTCGA-GAGAGAACCTT
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCT-GAAGAGAGAATCTT
EST: gi|86045453|gb|DR341208.1|DR341208
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCC
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCC
EST: gi|86045429|gb|DR341184.1|DR341184
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGAT
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGAT
EST: gi|86045498|gb|DR341253.1|DR341253
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAACCTTT
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAATCTTT
EST: gi|86045412|gb|DR341167.1|DR341167
EST:     AATTAAGGAAAGGAAGAACAGGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGGATGCCAAGAAGAAGTGAGATCCTGAAGAG
genomic: AATTAAGGAAAGGAAGAACAGGG-CGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTG-ATGCCAAGAAGAAGTGAGATCCTGAAGAG
EST: gi|86045467|gb|DR341222.1|DR341222
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAATCTTT
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAATCTTT
EST: gi|86045497|gb|DR341252.1|DR341252
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAACCTTT
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAATCTTT
EST: gi|86045479|gb|DR341234.1|DR341234
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAATCTTT
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAATCTTT
EST: gi|86045410|gb|DR341165.1|DR341165
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCC
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCC
EST: gi|164020232|gb|ES075207.1|ES075207
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAATCTTT
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAATCTTT
EST: gi|86045516|gb|DR341271.1|DR341271
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAACCTTT
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAATCTTT
EST: gi|86045465|gb|DR341220.1|DR341220
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAG
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAG
EST: gi|86045435|gb|DR341190.1|DR341190
EST:     AAATTAAGGAAAGGAAGAACAGGRCGAAGAAAATCCGTGGTGTTTAGAAG                         ACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAACCTTT
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAATCTTT
EST: gi|164237589|gb|EL998658.1|EL998658
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAATCTTT
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAATCTTT
EST: gi|86045495|gb|DR341250.1|DR341250
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAACCTTT
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAATCTTT
EST: gi|86045512|gb|DR341267.1|DR341267
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAC-CTTT
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAATCTTT
EST: gi|86045464|gb|DR341219.1|DR341219
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAG
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAG
EST: gi|86045434|gb|DR341189.1|DR341189
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAACCTTT
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAATCTTT
EST: gi|124937996|gb|EL014669.1|EL014669
EST:     GGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAATCTTT
genomic: GGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAATCTTT
EST: gi|86045458|gb|DR341213.1|DR341213
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAACCTTT
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAATCTTT
EST: gi|86045411|gb|DR341166.1|DR341166
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAAGAAGTGAGATCCTGAAGAGAGAACCTT
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAA-GAAGTGAGATCCTGAAGAGAGAATCTT
EST: gi|86045443|gb|DR341198.1|DR341198
EST:     AATTAAGGAAAGGAAGAACAGGGCGAAGAAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATC-TGAAGAGAGAA
genomic: AATTAAGGAAAGGAAGAACAGGGCGAAGAAAA-TCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAA
EST: gi|86045407|gb|DR341162.1|DR341162
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTG
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTG
EST: gi|86045436|gb|DR341191.1|DR341191
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGC-AAGAAG
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAG
EST: gi|86045424|gb|DR341179.1|DR341179
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGGGAGAACCTTT
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAATCTTT
EST: gi|86045471|gb|DR341226.1|DR341226
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAACCTTT
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAATCTTT
EST: gi|86045504|gb|DR341259.1|DR341259
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAACCTTT
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAATCTTT
EST: gi|86045509|gb|DR341264.1|DR341264
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAACCTTT
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAATCTTT
EST: gi|86045461|gb|DR341216.1|DR341216
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAA
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAA
EST: gi|86045476|gb|DR341231.1|DR341231
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGA
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGA
EST: gi|86045514|gb|DR341269.1|DR341269
EST:     AAATTAAGGAAAGGAAGAACAGGGCGA-GAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTG
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTG
EST: gi|86045456|gb|DR341211.1|DR341211
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAACCTTT
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAATCTTT
EST: gi|125024766|gb|EL097035.1|EL097035
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAA
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAA
EST: gi|86045451|gb|DR341206.1|DR341206
EST:     AAATTAAGGAAAGGAAGAACAGGGCGA-GAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGMAGAGAGAACCTTT
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAATCTTT
EST: gi|116413580|gb|EG456172.1|EG456172
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAATCTTT
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAATCTTT
EST: gi|86045490|gb|DR341245.1|DR341245
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAATGCTGGTGAT
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGAT
EST: gi|86045482|gb|DR341237.1|DR341237
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAGAAAGTGAGATCCTGAAGAGAGAACCTT
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAA-GTGAGATCCTGAAGAGAGAATCTT
EST: gi|86045477|gb|DR341232.1|DR341232
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAACCTTT
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAATCTTT
EST: gi|86045515|gb|DR341270.1|DR341270
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCGTGAAGAGAGAACCTT
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCC-TGAAGAGAGAATCTT
EST: gi|86045508|gb|DR341263.1|DR341263
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAAT
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAAT
EST: gi|86045463|gb|DR341218.1|DR341218
EST:     AATTAAGGAAAGGAAGAAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGC-AAGAAGAAGTGAGATCCTGAAGAGA
genomic: AATTAAGGAAAGGAAGAA-CAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGA
EST: gi|86045447|gb|DR341202.1|DR341202
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATG
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATG
EST: gi|86045496|gb|DR341251.1|DR341251
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAACCTTT
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAATCTTT
EST: gi|86045492|gb|DR341247.1|DR341247
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAACCTTT
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAATCTTT
EST: gi|164039557|gb|EL989442.1|EL989442
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAGAA
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAA
EST: gi|86045426|gb|DR341181.1|DR341181
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAG
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAG
EST: gi|86045484|gb|DR341239.1|DR341239
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAA
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAA
EST: gi|164043171|gb|ES140123.1|ES140123
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGA
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGA
EST: gi|86045422|gb|DR341177.1|DR341177
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAA-TCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCC
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCC
EST: gi|86045454|gb|DR341209.1|DR341209
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAGAAGTGAGAT
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGAT
EST: gi|86045438|gb|DR341193.1|DR341193
EST:     AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAG                         ACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAATCTTT
genomic: AAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGgtatgtatac ... atgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAATCTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgtttttgattgtgactgtagctttaagaatctgttttgatcaatgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAATCTTTATCTTGTGGGTTCTTGTTCTCCATAATCAATCACCTTTTATGTTATTTG
                                    ttttgat  putative branch site (score: 4)
                        tttaagaat  TA-rich tract