Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtttcttcttcatcatagtctctcggaatctaaacaccaaatgttctaatgtttttgctgtttcctttttgcagTTACCGTTGCTGCTGGATGGGAGGCTGCTTCTGTTCCAGCTGCTGGTTGGGAGTAAAAGCTCTCTTATTAGTTTAGCTCGAACTCGGTTAGATGTAGACC

Basic information

species Arabidopsis thaliana
transcript AT3G04770.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86079746|gb|DR375503.1|DR375503
EST:     ATGGTCTGGTGAAGTCGAACAGCCAATTTCTGCTGCACCTGCAGTTGGCG                         TTACCGTTGCTGCTGGATGGGAGGCTGCTTCTGTTCCAGCTGCTGGTTGGG
genomic: ATGGTCTGGTGAAGTCGAACAGCCAATTTCTGCTGCACCTGCAGTTGGCGgttagtttct ... ctttttgcagTTACCGTTGCTGCTGGATGGGAGGCTGCTTCTGTTCCAGCTGCTGGTTGGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctctcggaatctaaacaccaaatgttctaatgtttttgctgtttcctttttgcagTTACCGTTGCTGCTGGATGGGAGGCTGCTTCTGTTCCAGCTGCTGGTTGGGAGTAAAAGCTCTCTTATTAGTTTAGCTCGAACTCGGTTAGATGTAGACC
                        ttctaat  putative branch site (score: 2)
                              tgtttttgctgtttcc  CT-rich tract
                           taatgttttt  TA-rich tract