1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagcaccttgtttttagtttctgtttgatgtgttgcttcatcttgatatctcatctcactgtttttgtcagaacttgttatatgattctgttctataatcactgtcgttgaacattctgatttggtccactgatttcatatgaatacacagGTAAGTATGTTGGAAATCGTCCGATAAAACTACGAAAGAGTAGCTGGAAAGAGAGAACAGATCAGGAGGCTGCTGAAAGACAAAAG
species | Arabidopsis thaliana |
transcript | AT3G04500.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GAGTTTCTTAAATCCTGCGGATCTAGCAGCAGCCTTAAAAGAAATGAATG GTAAGTATGTTGGAAATCGTCCGATAAAACEST: gi|116430691|gb|EG473283.1|EG473283
genomic: GAGTTTCTTAAATCCTGCGGATCTAGCAGCAGCCTTAAAAGAAATGAATGgtaagcacct ... gaatacacagGTAAGTATGTTGGAAATCGTCCGATAAAAC
EST: GAGTTTCTTAAATCCTGCGGATCTAGCAGCAGCCTTAAAAGAAATGAATG GAAAGTATGTTGGAAATCGTCCGATAAAACTACGAAAGAGTAGCTGGAAAGEST: gi|86088425|gb|DR384184.1|DR384184
genomic: GAGTTTCTTAAATCCTGCGGATCTAGCAGCAGCCTTAAAAGAAATGAATGgtaagcacct ... gaatacacagGTAAGTATGTTGGAAATCGTCCGATAAAACTACGAAAGAGTAGCTGGAAAG
EST: GAGTTTCTTAAATCCTGCGGATCCAGCAGCAGCCTTAAAAGAAATGAATG GTAAGTATGTTGGAAATCGTCCGATAAAACTACGAAAGAGTAGCTGGAAAGEST: gi|47828762|gb|CK118446.1|CK118446
genomic: GAGTTTCTTAAATCCTGCGGATCTAGCAGCAGCCTTAAAAGAAATGAATGgtaagcacct ... gaatacacagGTAAGTATGTTGGAAATCGTCCGATAAAACTACGAAAGAGTAGCTGGAAAG
EST: GAGTTTCTTAAATCCTGCGGATCTAGCAGCAGCCTTAAAAGAAATGAATG GGTA-GTATGTTGGAAATCGTCCGATAAA
genomic: GAGTTTCTTAAATCCTGCGGATCTAGCAGCAGCCTTAAAAGAAATGAATGgtaagcacct ... gaatacacagG-TAAGTATGTTGGAAATCGTCCGATAAA
aatcactgtcgttgaacattctgatttggtccactgatttcatatgaatacacagGTAAGTATGTTGGAAATCGTCCGATAAAACTACGAAAGAGTAGCTGGAAAGAGAGAACAGATCAGGAGGCTGCTGAAAGACAAAAG
cactgat putative branch site (score: 3)
atttcatatgaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcaccttgtttttagtttctgtttgatgtgttgcttcatcttgatatctcatctcactgtttttgtcagaacttgttatatgattctgttctataatcactgtcgttgaacattctgatttggtccactgatttcatatgaatacacagGTAAGTATGTTGGAAATCGTCCGATAAAACTACGAAAGAGTAGCTGGAAAGAGAGAACAGATCAGGAGGCTGCTGAAAGACAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT