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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatttgactttttgacttgctgatttcattacttctcattgtttcatcatcttagtgattctctgtaatgtcatatatgcagAATGAGGTTGATTGTGCTTATTTCCTAAGAACCGGACACTGTAAATTTGGTGGTACTTGTAAATTCAACCACCCTCAGCCTCAACCAACCAACATGATGG

Basic information

species Arabidopsis thaliana
transcript AT3G02830.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86037524|gb|DR333279.1|DR333279
EST:     GGATTGCTGGAAGAGTCTCTCTCAATATGTTAGGCTATCCTCTACGCTCG                         AATGAGGTTGATTGTGCTTATTTCCTAAGAACCGGACACTTTAAATTTGGT
genomic: GGATTGCTGGAAGAGTCTCTCTCAATATGTTAGGCTATCCTCTACGCTCGgtatatttga ... atatatgcagAATGAGGTTGATTGTGCTTATTTCCTAAGAACCGGACACTGTAAATTTGGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attacttctcattgtttcatcatcttagtgattctctgtaatgtcatatatgcagAATGAGGTTGATTGTGCTTATTTCCTAAGAACCGGACACTGTAAATTTGGTGGTACTTGTAAATTCAACCACCCTCAGCCTCAACCAACCAACATGATGG
                                           tcatatat  TA-rich tract