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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcaattcgtgggcctcgtatcgtgtttaactttgataataatacactagcgtcctttgtggatacatcttctttcacaagataaaagtcgcacactcaatagtttcatacttgcctatccttttagTTACAAAGCTTGGGGTTCTCTCTTGGGACTACAGCTAGCAGAAAGGGACATAATTGTGGCATGTCTAGATTACAG

Basic information

species Arabidopsis thaliana
transcript AT3G02410.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116389289|gb|EG431881.1|EG431881
EST:     GGCCTGAAGCCGGTTGTAGTTTTCGTTACTGGTGGAGCTTGGATTATCGG                         TTACAAAGCTTGGGGTTCTCTCTTGGGACTACAGCTAGCAGAAAGGGACAT
genomic: GGCCTGAAGCCGGTTGTAGTTTTCGTTACTGGTGGAGCTTGGATTATCGGgtaagcaatt ... atccttttagTTACAAAGCTTGGGGTTCTCTCTTGGGACTACAGCTAGCAGAAAGGGACAT
EST: gi|116389287|gb|EG431879.1|EG431879
EST:     GGCCTGAAGCCGGTTGTAGTTTTCGTTACTGGTGGAGCTTGGATTATCGG                         TTACAAAGCTTGGGGTTCTCTCTTGGGACTACAGCTAGCAGAAAGGGACAT
genomic: GGCCTGAAGCCGGTTGTAGTTTTCGTTACTGGTGGAGCTTGGATTATCGGgtaagcaatt ... atccttttagTTACAAAGCTTGGGGTTCTCTCTTGGGACTACAGCTAGCAGAAAGGGACAT
EST: gi|116389292|gb|EG431884.1|EG431884
EST:     GGCCTGAAGCCGGTTGTAGTTTTCGTTACTGGTGGAGCTTGGATTATCGG                         TTACAAAGCTTGGGGTTCTCTCTTGGGACTACAGCTAGCAGAAAGGGACAT
genomic: GGCCTGAAGCCGGTTGTAGTTTTCGTTACTGGTGGAGCTTGGATTATCGGgtaagcaatt ... atccttttagTTACAAAGCTTGGGGTTCTCTCTTGGGACTACAGCTAGCAGAAAGGGACAT
EST: gi|116389288|gb|EG431880.1|EG431880
EST:     GGCCTGAAGCCGGTTGTAGTTTTCGTTACTGGTGGAGCTTGGATTATCGG                         TTACAAAGCTTGGGGTTCTCTCTTGGGACTACAGCTAGCAGAAAGGGACAT
genomic: GGCCTGAAGCCGGTTGTAGTTTTCGTTACTGGTGGAGCTTGGATTATCGGgtaagcaatt ... atccttttagTTACAAAGCTTGGGGTTCTCTCTTGGGACTACAGCTAGCAGAAAGGGACAT
EST: gi|116389291|gb|EG431883.1|EG431883
EST:     GGCCTGAAGCCGGTTGTAGTTTTCGTTACTGGTGGAGCTTGGATTATCGG                         TTACAAAGCTTGGGGTTCTCTCTTGGGACTACAGCTAGCAGAAAGGGACAT
genomic: GGCCTGAAGCCGGTTGTAGTTTTCGTTACTGGTGGAGCTTGGATTATCGGgtaagcaatt ... atccttttagTTACAAAGCTTGGGGTTCTCTCTTGGGACTACAGCTAGCAGAAAGGGACAT
EST: gi|116389290|gb|EG431882.1|EG431882
EST:     GGCCTGAAGCCGGTTGTAGTTTTCGTTACTGGTGGAGCTTGGATTATCGG                         TTACAAAGCTTGGGGTTCTCTCTTGGGACTACAGCTAGCAGAAAGGGACAT
genomic: GGCCTGAAGCCGGTTGTAGTTTTCGTTACTGGTGGAGCTTGGATTATCGGgtaagcaatt ... atccttttagTTACAAAGCTTGGGGTTCTCTCTTGGGACTACAGCTAGCAGAAAGGGACAT
EST: gi|116389281|gb|EG431873.1|EG431873
EST:     GGCCTGAAGCCGGTTGTAGTTTTCGTTACTGGTGGAGCTTGGATTATCGG                         TTACAAAGCTTGGGGTTCTCTCTTGGGACTACAGCTAGCAGAAAGGGACAT
genomic: GGCCTGAAGCCGGTTGTAGTTTTCGTTACTGGTGGAGCTTGGATTATCGGgtaagcaatt ... atccttttagTTACAAAGCTTGGGGTTCTCTCTTGGGACTACAGCTAGCAGAAAGGGACAT
EST: gi|116389278|gb|EG431870.1|EG431870
EST:     GGCCTGAAGCCGGTTGTAGTTTTCGTTACTGGTGGAGCTTGGATTATCGG                         TTACAAAGCTTGGGGTTCTCTCTTGGGACTACAGCTAGCAGAAAGGGACAT
genomic: GGCCTGAAGCCGGTTGTAGTTTTCGTTACTGGTGGAGCTTGGATTATCGGgtaagcaatt ... atccttttagTTACAAAGCTTGGGGTTCTCTCTTGGGACTACAGCTAGCAGAAAGGGACAT
EST: gi|116389280|gb|EG431872.1|EG431872
EST:     GGCCTGAAGCCGGTTGTAGTTTTCGTTACTGGTGGAGCTTGGATTATCGG                         TTACAAAGCTTGGGGTTCTCTCTTGGGACTACAGCTAGCAGAAAGGGACAT
genomic: GGCCTGAAGCCGGTTGTAGTTTTCGTTACTGGTGGAGCTTGGATTATCGGgtaagcaatt ... atccttttagTTACAAAGCTTGGGGTTCTCTCTTGGGACTACAGCTAGCAGAAAGGGACAT
EST: gi|116389279|gb|EG431871.1|EG431871
EST:     GGCCTGAAGCCGGTTGTAGTTTTCGTTACTGGTGGAGCTTGGATTATCGG                         TTACAAAGCTTGGGGTTCTCTCTTGGGACTACAGCTAGCAGAAAGGGACAT
genomic: GGCCTGAAGCCGGTTGTAGTTTTCGTTACTGGTGGAGCTTGGATTATCGGgtaagcaatt ... atccttttagTTACAAAGCTTGGGGTTCTCTCTTGGGACTACAGCTAGCAGAAAGGGACAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcacaagataaaagtcgcacactcaatagtttcatacttgcctatccttttagTTACAAAGCTTGGGGTTCTCTCTTGGGACTACAGCTAGCAGAAAGGGACATAATTGTGGCATGTCTAGATTACAG
                                      cttgcctatcctttt  CT-rich tract
      aagataaaa  TA-rich tract