1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgatttacttctgtacatacactgaaagattcacacaaatctttctctatatatagactgagacacatgcatgaaatgtttttgatgcgtgaggttatctgaaaatgcctcttcttttttgcagACACAGTATATGCTTGACCAGCTCTCTGATCTTCAAGGTAAGGAGCATATCTTGCTTGATGCCAACAGAGCTTTGTCAATGAAG
species | Arabidopsis thaliana |
transcript | AT3G02310.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCGTCAACTAGACGGCTCTCTGAAGCAAGTTCGCTGCATCAAG ACACAGTATATGCTTGACCAGCTCTCTGATCTTCAEST: gi|164064251|gb|ES146846.1|ES146846
genomic: GCGTCAACTAGACGGCTCTCTGAAGCAAGTTCGCTGCATCAAGgtgatttact ... ttttttgcagACACAGTATATGCTTGACCAGCTCTCTGATCTTCA
EST: AGCTTGAGCGTCAACTAGACGGCTCTCTGAAGCAAGTTCGCTGCATCAAG ACACAGTATATGCTTGACCAGCTCTCT
genomic: AGCTTGAGCGTCAACTAGACGGCTCTCTGAAGCAAGTTCGCTGCATCAAGgtgatttact ... ttttttgcagACACAGTATATGCTTGACCAGCTCTCT
catgaaatgtttttgatgcgtgaggttatctgaaaatgcctcttcttttttgcagACACAGTATATGCTTGACCAGCTCTCTGATCTTCAAGGTAAGGAGCATATCTTGCTTGATGCCAACAGAGCTTTGTCAATGAAG
ttttgat putative branch site (score: 4)
tgcctcttcttttttg putative PPT
aatgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgatttacttctgtacatacactgaaagattcacacaaatctttctctatatatagactgagacacatgcatgaaatgtttttgatgcgtgaggttatctgaaaatgcctcttcttttttgcagACACAGTATATGCTTGACCAGCTCTCTGATCTTCAAGGTAAGGAGCATATCTTGCTTGATGCCAACAGAGCTTTGTCAATGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT