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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttcttctcataactttcattacctgaaaatatgttaacttgtttggttaattttggtgtcttgtctgtccacacagCCCAAAAGGTCCACGGATAGCATCAGTCATTCCAAATCCGGGGAAGAACGCATATATACCGCCTCTGGTCCAATGTACAAAGCATATGTGTCCAGTTAGA

Basic information

species Arabidopsis thaliana
transcript AT3G02210.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164158998|gb|ES020189.1|ES020189
EST:     TGCAGAAACACTTCTCAGCCAGGGAATTGTGTAGA                         CCCAAAAGGTCCACGGATAGCATCAGTCATTCCAAATCCGGGGAANAACGC
genomic: TGCAGAAACACTTCTCAGCCAGGGAATTGTGTAGAgtaagttctt ... gtccacacagCCCAAAAGGTCCACGGATAGCATCAGTCATTCCAAATCCGGGGAAGAACGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctgaaaatatgttaacttgtttggttaattttggtgtcttgtctgtccacacagCCCAAAAGGTCCACGGATAGCATCAGTCATTCCAAATCCGGGGAAGAACGCATATATACCGCCTCTGGTCCAATGTACAAAGCATATGTGTCCAGTTAGA
                                          tctgtcc  CT-rich tract
     aaatatgttaactt  TA-rich tract