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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaatgaagtaggtctaggatgaaaatttctgtccttttattttaaatgttcggattgaggatatgaatgtaatgcttgctttttttgcctatttggacagCTTTTTCCGAACTTAGACAAGGTAGTGTTCTTAGATGATGATATAGTGATACAGAAAGATTTATCTCCGCTTTGGGATATTGACCTTAACGGGAAGGTTA

Basic information

species Arabidopsis thaliana
transcript AT3G01040.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116476805|gb|EG519397.1|EG519397
EST:     GTCCCAAATACATATCTTTGCTCAACCATCTTAGAATATATCTACCAGAG                         CTTTTTCCGAACTTAGACAAGGTAGTGTTCTTAGATGATGATATAGTGATA
genomic: GTCCCAAATACATATCTTTGCTCAACCATCTTAGAATATATCTACCAGAGgtaaaagaaa ... atttggacagCTTTTTCCGAACTTAGACAAGGTAGTGTTCTTAGATGATGATATAGTGATA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgttcggattgaggatatgaatgtaatgcttgctttttttgcctatttggacagCTTTTTCCGAACTTAGACAAGGTAGTGTTCTTAGATGATGATATAGTGATACAGAAAGATTTATCTCCGCTTTGGGATATTGACCTTAACGGGAAGGTTA
                                 ctttttttgcctattt  CT-rich tract
                                  ttttttt  TA-rich tract