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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtaattaatgtactaggcccatacggcttgtccaaatacttactgtaacgttttctcatcatgtgttcatctggtcttggtttgacgttatctcctcctttattactcagGAAGTCATCTTAGGGTTGCCTCCTGCTTGTTGTTACCAGCAGTTCAATTGGCAGTGGGAATCTGCAATCCATCATGGGTTTCTTTGCCATTTTTTATTGG

Basic information

species Arabidopsis thaliana
transcript AT2G48060.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116402574|gb|EG445166.1|EG445166
EST:     TGGCGGGACACATGGTGGAT-TCACTTCTCAGGAATTTTCGAACACCTAG                         GAAGTCATCTTAGGGTTGCCTCCTGCTTGTTGTTACCAGCAGTTCAATTGG
genomic: TGGCGGGACACATGGTGG-TCTCACTTCTCAGGAATTTTCGAACACCTAGgtttgtaatt ... tattactcagGAAGTCATCTTAGGGTTGCCTCCTGCTTGTTGTTACCAGCAGTTCAATTGG
EST: gi|116402648|gb|EG445240.1|EG445240
EST:     ATGGCGGGACACATGGTGGTCTCACTTCTCAGGAATTTTCGAACACCTAG                         GAAGTCATCTTAGGGTTGCCTCCTGCTTGTTGTTACCAGCAGTTCAATTGG
genomic: ATGGCGGGACACATGGTGGTCTCACTTCTCAGGAATTTTCGAACACCTAGgtttgtaatt ... tattactcagGAAGTCATCTTAGGGTTGCCTCCTGCTTGTTGTTACCAGCAGTTCAATTGG
EST: gi|116402577|gb|EG445169.1|EG445169
EST:     ATGGCGGGACACATGGTGGTCTCACTTCTCAGGAATTTTCGAACACCTAG                         GAAGTCATCTTAGGGTTGCCTCCTGCTTGTTGTTACCAGCAGTTCAATTGG
genomic: ATGGCGGGACACATGGTGGTCTCACTTCTCAGGAATTTTCGAACACCTAGgtttgtaatt ... tattactcagGAAGTCATCTTAGGGTTGCCTCCTGCTTGTTGTTACCAGCAGTTCAATTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatcatgtgttcatctggtcttggtttgacgttatctcctcctttattactcagGAAGTCATCTTAGGGTTGCCTCCTGCTTGTTGTTACCAGCAGTTCAATTGGCAGTGGGAATCTGCAATCCATCATGGGTTTCTTTGCCATTTTTTATTGG
                        gtttgac  putative branch site (score: 4)
                                ttatctcctcctttat  CT-rich tract
                                           tttattact  TA-rich tract