Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgtttttacaaagaaaactttccctatctctacctccagtagcattacacatcattactaaacactcctgttaccttgttcaacagAATTTTCTATTTACATCAAGCCGCGAAGACTCAGACTTGAAACTTATTGATTTTGGTCTCTCAGACTTTATTAGACCTG

Basic information

species Arabidopsis thaliana
transcript AT2G46700.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G46700.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: Vv15s0048g02840.t01 (Vitis vinifera), 3'ss of exon 4
-------------------------------------------------gtctgtttttacaaagaaa----actttccctatctctacctccagtag---cattacacatcattactaa---acactcctgttaccttgttc---aacagAATTTTCTATTTACATCAAGCCGCGAAGACTCAGACTTGAAACTTATTGATTTTGGTCTCTCAGACTTTATTAGACCTG
                                                  |    ||||  ||||||      |||||  |   | ||| |  | |     ||  | | |  | || | |   | |||| |    ||| |||    |||||||||| || ||||| |||||  | |||||  | ||  |||| ||||||||||||||||| || |||||||||||||| |
gtttcttcttttgcttgattaatgttgatgaactgtgaccgactatcttattccctttttgaaagaagtgctgctttctttccttttacgtttaattctctcaccatatagtaataattactgatactctttcctcctcgttgtcgaacagAATTTCCTTTTTACCTCAAGAAGTGAAGATGCTGATATGAAGCTTATTGATTTTGGTCTTTCTGACTTTATTAGACCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acctccagtagcattacacatcattactaaacactcctgttaccttgttcaacagAATTTTCTATTTACATCAAGCCGCGAAGACTCAGACTTGAAACTTATTGATTTTGGTCTCTCAGACTTTATTAGACCTG
                        tactaaa  putative branch site (score: 1)
                                          ccttgttc  putative PPT
                      attactaaa  TA-rich tract