1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatttcaactttcttaaggcctttcttttgtctatcaatatctctctttttttttttattagcttaaaccttatgtggtgctactgccattgttactagACTGGAAAATTGCTTAAGCAATCAGATGAGGAAGTGGGTCACAAGGAGGCCATTACATCCCTCTGCAAAGCAGCTGATGACTCTCACTTCCTTACAGGTT
species | Arabidopsis thaliana |
transcript | AT2G46290.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CCATTGTTAGTGGTGGTGAAGATGCTGCTATCAGAATCTGGGATGCAGAG ACTGGAAAATTGCTTAAGCAATCAGATGAGGAAGTGGGTCACAAGGAGGCCEST: gi|116426849|gb|EG469441.1|EG469441
genomic: CCATTGTTAGTGGTGGTGAAGATGCTGCTATCAGAATCTGGGATGCAGAGgtatttcaac ... ttgttactagACTGGAAAATTGCTTAAGCAATCAGATGAGGAAGTGGGTCACAAGGAGGCC
EST: CCATTGTTAGTGGTGGTGAAGATGCTGCTATCAGAATCTGGGATGCAGAG ACTGGAAAATTGCTTAAGCAATCAGATGAGGAAGTGGGTCACAAGGAGGCCEST: gi|116426850|gb|EG469442.1|EG469442
genomic: CCATTGTTAGTGGTGGTGAAGATGCTGCTATCAGAATCTGGGATGCAGAGgtatttcaac ... ttgttactagACTGGAAAATTGCTTAAGCAATCAGATGAGGAAGTGGGTCACAAGGAGGCC
EST: CCATTGTTAGTGGTGGTGAAGATGCTGCTATCAGAATCTGGGATGCAGAG ACTGGAAAATTGCTTAAGCAATCAGATGAGGAAGTGGGTCACAAGGAGGCCEST: gi|116426846|gb|EG469438.1|EG469438
genomic: CCATTGTTAGTGGTGGTGAAGATGCTGCTATCAGAATCTGGGATGCAGAGgtatttcaac ... ttgttactagACTGGAAAATTGCTTAAGCAATCAGATGAGGAAGTGGGTCACAAGGAGGCC
EST: CCATTGTTAGTGGTGGTGAAGATGCTGCTATCAGAATCTGGGATGCAGAG ACTGGAAAATTGCTTAAGCAATCAGATGAGGAAGTGGGTCACAAGGAGGCC
genomic: CCATTGTTAGTGGTGGTGAAGATGCTGCTATCAGAATCTGGGATGCAGAGgtatttcaac ... ttgttactagACTGGAAAATTGCTTAAGCAATCAGATGAGGAAGTGGGTCACAAGGAGGCC
tctttttttttttattagcttaaaccttatgtggtgctactgccattgttactagACTGGAAAATTGCTTAAGCAATCAGATGAGGAAGTGGGTCACAAGGAGGCCATTACATCCCTCTGCAAAGCAGCTGATGACTCTCACTTCCTTACAGGTT
ttttttttattagctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttcaactttcttaaggcctttcttttgtctatcaatatctctctttttttttttattagcttaaaccttatgtggtgctactgccattgttactagACTGGAAAATTGCTTAAGCAATCAGATGAGGAAGTGGGTCACAAGGAGGCCATTACATCCCTCTGCAAAGCAGCTGATGACTCTCACTTCCTTACAGGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT