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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaactcatatcactgtccttcatgtgtcgtagcagcagttgctttagtggttttattgatgttgaagtgtatgcaagtatatatgtatatagatagtttctgatagcgtaaattgatgatgcagGAGTTGATAAATTTCACGCTGCACTACATTGCAGACCTGGATATTCCAATTAAGAG

Basic information

species Arabidopsis thaliana
transcript AT2G45790.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124731588|gb|EH822990.1|EH822990
EST:     AGACGATAAACTCAAG                         GAGTTGATAAATTTCACGCTGCACTACATTGCAGACCTGGATATTCCAATT
genomic: AGACGATAAACTCAAGgtaaactcat ... gatgatgcagGAGTTGATAAATTTCACGCTGCACTACATTGCAGACCTGGATATTCCAATT
EST: gi|164148209|gb|EL967408.1|EL967408
EST:     AGAGCCTGAAGCTGCACCTTGGAGACGATAAACTCAAG                         GAGTTGATAAATTTCACGCTGCACTACATTGCAGACCTGGATATTCCAATT
genomic: AGAGCCTGAAGCTGCACCTTGGAGACGATAAACTCAAGgtaaactcat ... gatgatgcagGAGTTGATAAATTTCACGCTGCACTACATTGCAGACCTGGATATTCCAATT
EST: gi|152034089|gb|BP867302.2|BP867302
EST:     AGCCCTGAAGCCTGCACCTTGGAGACGATAAACTCAAG                         GAGTTGATAAATTTCACGC
genomic: AGCC-TGAAGC-TGCACCTTGGAGACGATAAACTCAAGgtaaactcat ... gatgatgcagGAGTTGATAAATTTCACGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgcaagtatatatgtatatagatagtttctgatagcgtaaattgatgatgcagGAGTTGATAAATTTCACGCTGCACTACATTGCAGACCTGGATATTCCAATTAAGAG
        tatatatgtatataga  TA-rich tract