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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacaccaagaatgatacctcacagataagtttttttctacaaccgctttgaagttggatttaactagaaaatgttgcagACTTTTGGTAGGACACCTCTTACTAGTATTAGTCCCAAGAAGACATGGGAAGGAACTATTGTAGGACTTGTTGGTTGTATAGCCATTACCATATTACTCT

Basic information

species Arabidopsis thaliana
transcript AT2G45150.3
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G45150.3 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA18G06190.1 (Glycine max), 3'ss of exon 4
------------------gtaacaccaagaatgatacctcacagataagtttttttctacaaccgctttgaagttggatttaactagaaaatgttgcagACTTTTGGTAGGACACCTCTTACTAGTATTAGTCCCAAGAAGACATGGGAAGGAACTATTGTAGGACTTGTTGGTTGTATAGCCATTACCATATTACTCT-
                   | |||   | |  | | | |          |       |||| ||    |  ||     | |   |  |   |  ||||| | |||||||| ||||| ||||| ||||| ||||| |||||||||||||| || |||||| ||||  ||  ||| |||||||  | | |     | || | 
ttattagtttttcttgacttcacattcaaacagtttctttgttatccgttccaaaaatacacccttaatccagcaatttctttttgtattttcatgcaggCATTTGGTAGAACACCACTTACCAGTATAAGTCCAAAGAAGACATGGGAGGGTACTATTATAGGCTTTTGTGGGTGTATAGTTACTTCTGCTGTTCTGTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataagtttttttctacaaccgctttgaagttggatttaactagaaaatgttgcagACTTTTGGTAGGACACCTCTTACTAGTATTAGTCCCAAGAAGACATGGGAAGGAACTATTGTAGGACTTGTTGGTTGTATAGCCATTACCATATTACTCT
                                 atttaac  putative branch site (score: 3)
                                 atttaactagaaaat  TA-rich tract