1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgaagtatgaaatcaacatcaactatttgacccatatatcatattctgattataaggagatatataacagGTAGTACAAGCTGTTTCAAAGAGGTTATATGATCATACAACATTGACATATTCAAGTGTGATGGGTCCAAACGAAGATATAAGTATTTTTGACCATCCAA
species | Arabidopsis thaliana |
transcript | AT2G43255.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTAACTTTTACGGAGTTATCAAATTCACCATGAANNNNNNNGGAGAAAAG GTAGTACAAGCTGTTTCAAAGAGGTTATATGATCATACAACATTGACATATEST: gi|116395284|gb|EG437876.1|EG437876
genomic: TTAACTTTTACGGAGTTATCAAATTCACCATGAATTTTTTTGGAGAAAAGgtgaagtatg ... tatataacagGTAGTACAAGCTGTTTCAAAGAGGTTATATGATCATACAACATTGACATAT
EST: TTAACTTTTACGGAGTTATCAAATTCACCATGAANNNNNNNGGAGAAAAG GTAGTACAAGCTGTTTCAAAGAGGTTATATGATCATACAACATTGACATATEST: gi|116395276|gb|EG437868.1|EG437868
genomic: TTAACTTTTACGGAGTTATCAAATTCACCATGAATTTTTTTGGAGAAAAGgtgaagtatg ... tatataacagGTAGTACAAGCTGTTTCAAAGAGGTTATATGATCATACAACATTGACATAT
EST: TTAACTTTTACGGAGTTATCAAATTCACCATGAA-TTTTTTGGAGAAAAG GTAGTACAAGCTGTTTCAAAGAGGTTATATGATCATACAACATTGACATATEST: gi|116395160|gb|EG437752.1|EG437752
genomic: TTAACTTTTACGGAGTTATCAAATTCACCATGAATTTTTTTGGAGAAAAGgtgaagtatg ... tatataacagGTAGTACAAGCTGTTTCAAAGAGGTTATATGATCATACAACATTGACATAT
EST: TTAACTTTTACGGAGTTATCAAATTCACCATGAANNNNNNNGGAGAAAAG GTAGTACAAGCTGTTTCAAAGAGGTTATATGATCATACAACATTGACATATEST: gi|116395164|gb|EG437756.1|EG437756
genomic: TTAACTTTTACGGAGTTATCAAATTCACCATGAATTTTTTTGGAGAAAAGgtgaagtatg ... tatataacagGTAGTACAAGCTGTTTCAAAGAGGTTATATGATCATACAACATTGACATAT
EST: TTAACTTTTACGGAGTTATCAAATTCACCATGAANNNNNNNGGAGAAAAG GTAGTACAAGCTGTTTCAAAGAGGTTATATGATCATACAACATTGACATATEST: gi|116395162|gb|EG437754.1|EG437754
genomic: TTAACTTTTACGGAGTTATCAAATTCACCATGAATTTTTTTGGAGAAAAGgtgaagtatg ... tatataacagGTAGTACAAGCTGTTTCAAAGAGGTTATATGATCATACAACATTGACATAT
EST: TTAACTTTTACGGAGTTATCAAATTCACCATGAANNNNNNNGGAGAAAAG GTAGTACAAGCTGTTTCAAAGAGGTTATATGATCATACAACATTGACATATEST: gi|116395278|gb|EG437870.1|EG437870
genomic: TTAACTTTTACGGAGTTATCAAATTCACCATGAATTTTTTTGGAGAAAAGgtgaagtatg ... tatataacagGTAGTACAAGCTGTTTCAAAGAGGTTATATGATCATACAACATTGACATAT
EST: TTTTTTGGAGAAAAG GTAGTACAAGCTGTTTCAAAGAGGTTATATGATCATACAACATTGACATATEST: gi|116395158|gb|EG437750.1|EG437750
genomic: TTTTTTGGAGAAAAGgtgaagtatg ... tatataacagGTAGTACAAGCTGTTTCAAAGAGGTTATATGATCATACAACATTGACATAT
EST: TTAACTTTTACGGAGTTATCAAATTCACCATGAANNNNNNNGGAGAAAAG GTAGTACAAGCTGTTTCAAAGAGGTTATATGATCATACAACATTGACATATEST: gi|116395154|gb|EG437746.1|EG437746
genomic: TTAACTTTTACGGAGTTATCAAATTCACCATGAATTTTTTTGGAGAAAAGgtgaagtatg ... tatataacagGTAGTACAAGCTGTTTCAAAGAGGTTATATGATCATACAACATTGACATAT
EST: TTAACTTTTACGGAGTTATCAAATTCACCATGAANNNNNNNGGAGAAAAG GTAGTACAAGCTGTTTCAAAGAGGTTATATGATCATACAACATTGACATATEST: gi|116395163|gb|EG437755.1|EG437755
genomic: TTAACTTTTACGGAGTTATCAAATTCACCATGAATTTTTTTGGAGAAAAGgtgaagtatg ... tatataacagGTAGTACAAGCTGTTTCAAAGAGGTTATATGATCATACAACATTGACATAT
EST: TTAACTTTTACGGAGTTATCAAATTCACCATGAANNNNNNNGGAGAAAAG GTAGTACAAGCTGTTTCAAAGAGGTTATATGATCATACAACATTGACATATEST: gi|116395155|gb|EG437747.1|EG437747
genomic: TTAACTTTTACGGAGTTATCAAATTCACCATGAATTTTTTTGGAGAAAAGgtgaagtatg ... tatataacagGTAGTACAAGCTGTTTCAAAGAGGTTATATGATCATACAACATTGACATAT
EST: TTAACTTTTACGGAGTTATCAAATTCACCATGAANNNNNNNGGAGAAAAG GTAGTACAAGCTGTTTCAAAGAGGTTATATGATCATACAACATTGACATATEST: gi|116395287|gb|EG437879.1|EG437879
genomic: TTAACTTTTACGGAGTTATCAAATTCACCATGAATTTTTTTGGAGAAAAGgtgaagtatg ... tatataacagGTAGTACAAGCTGTTTCAAAGAGGTTATATGATCATACAACATTGACATAT
EST: TTAACTTTTACGGAGTTATCAAATTCACCATGAANNNNNNNGGAGAAAAG GTAGTACAAGCTGTTTCAAAGAGGTTATATGATCATACAACATTGACATATEST: gi|116395156|gb|EG437748.1|EG437748
genomic: TTAACTTTTACGGAGTTATCAAATTCACCATGAATTTTTTTGGAGAAAAGgtgaagtatg ... tatataacagGTAGTACAAGCTGTTTCAAAGAGGTTATATGATCATACAACATTGACATAT
EST: TTAACTTTTACGGAGTTATCAAATTCACCATGAATTTTTT-GGAGAAAAG GTAGTACAAGCTGTTTCAAAGAGGTTATATGATCATACAACATTGACATATEST: gi|116395099|gb|EG437691.1|EG437691
genomic: TTAACTTTTACGGAGTTATCAAATTCACCATGAATTTTTTTGGAGAAAAGgtgaagtatg ... tatataacagGTAGTACAAGCTGTTTCAAAGAGGTTATATGATCATACAACATTGACATAT
EST: TTAACTTTTACGGAGTTATCAAATTCACCATGAANNNNNNNGGAGAAAAG GTAGTACAAGCTGTTTCAAAGAGGTTATATGATCATACAACATTGACATATEST: gi|116395285|gb|EG437877.1|EG437877
genomic: TTAACTTTTACGGAGTTATCAAATTCACCATGAATTTTTTTGGAGAAAAGgtgaagtatg ... tatataacagGTAGTACAAGCTGTTTCAAAGAGGTTATATGATCATACAACATTGACATAT
EST: TTAACTTTTACGGAGTTATCAAATTCACCATGAANNNNNNNGGAGAAAAG GTAGTACAAGCTGTTTCAAAGAGGTTATATGATCATACAACATTGACATATEST: gi|116395283|gb|EG437875.1|EG437875
genomic: TTAACTTTTACGGAGTTATCAAATTCACCATGAATTTTTTTGGAGAAAAGgtgaagtatg ... tatataacagGTAGTACAAGCTGTTTCAAAGAGGTTATATGATCATACAACATTGACATAT
EST: TTAACTTTTACGGAGTTATCAAATTCACCATGAANNNNNNNGGAGAAAAG GTAGTACAAGCTGTTTCAAAGAGGTTATATGATCATACAACATTGACATAT
genomic: TTAACTTTTACGGAGTTATCAAATTCACCATGAATTTTTTTGGAGAAAAGgtgaagtatg ... tatataacagGTAGTACAAGCTGTTTCAAAGAGGTTATATGATCATACAACATTGACATAT
acatcaactatttgacccatatatcatattctgattataaggagatatataacagGTAGTACAAGCTGTTTCAAAGAGGTTATATGATCATACAACATTGACATATTCAAGTGTGATGGGTCCAAACGAAGATATAAGTATTTTTGACCATCCAA
ttctgat putative branch site (score: 3)
atatatcatattctga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaagtatgaaatcaacatcaactatttgacccatatatcatattctgattataaggagatatataacagGTAGTACAAGCTGTTTCAAAGAGGTTATATGATCATACAACATTGACATATTCAAGTGTGATGGGTCCAAACGAAGATATAAGTATTTTTGACCATCCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA