1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaagcgaaactaaagaactcaataaagcttcttttgcatgaattctactaaaactctgtttttgttgcaccagATTCAAGCTGCTTTTCGCACAGATGAAATCCGAAGAACTCCTCCTACACCGCAAGATGAAATGAGAGCAGGGATGAGCTACTTCCATGAGACAATCTGGA
species | Arabidopsis thaliana |
transcript | AT2G42600.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACATTACTCCTGATGACAAACAAGAACTCGATGAAGCTCTGCAACGAGAG ATTCAAGCTGCTTTTCGCACAGATGAAATCCGAAEST: gi|47828387|gb|CK118071.1|CK118071
genomic: ACATTACTCCTGATGACAAACAAGAACTCGATGAAGCTCTGCAACGAGAGgtaagcgaaa ... gttgcaccagATTCAAGCTGCTTTTCGCACAGATGAAATCCGAA
EST: ACATTACTCCTGATGACAAACAAGAACTCGATGAAGCTCTGCAACGAGAG ATTCAAGCTGCTTTTCGCACAGATGAAATCCGAAGAACTCCTCCTACACCGEST: gi|164226648|gb|ES070162.1|ES070162
genomic: ACATTACTCCTGATGACAAACAAGAACTCGATGAAGCTCTGCAACGAGAGgtaagcgaaa ... gttgcaccagATTCAAGCTGCTTTTCGCACAGATGAAATCCGAAGAACTCCTCCTACACCG
EST: TGACAAACAAGAACTCGATGAAGCTCTGCAACGAGAG ATTCAAGCTGCTTTTCGCACAGATGAAATCCGAAGAACTCCTCCTACACCGEST: gi|125236160|gb|EL250245.1|EL250245
genomic: TGACAAACAAGAACTCGATGAAGCTCTGCAACGAGAGgtaagcgaaa ... gttgcaccagATTCAAGCTGCTTTTCGCACAGATGAAATCCGAAGAACTCCTCCTACACCG
EST: GACAAACAAGAACTCGATGAAGCTCTGCAACGAGAG ATTCAAGCTGCTTTTCGCACAGATGAAATCCGAAGAACTCCTCCTACACCGEST: gi|116477131|gb|EG519723.1|EG519723
genomic: GACAAACAAGAACTCGATGAAGCTCTGCAACGAGAGgtaagcgaaa ... gttgcaccagATTCAAGCTGCTTTTCGCACAGATGAAATCCGAAGAACTCCTCCTACACCG
EST: ACATTACTCCTGATGACAAACAAGAACTCGATGAAGCTCTGCAACGAGAG ATTCAAGCTGCTTTTCGCACAGATGAAATCCGAAGAACTCCTCCTACACCGEST: gi|125044477|gb|EL116746.1|EL116746
genomic: ACATTACTCCTGATGACAAACAAGAACTCGATGAAGCTCTGCAACGAGAGgtaagcgaaa ... gttgcaccagATTCAAGCTGCTTTTCGCACAGATGAAATCCGAAGAACTCCTCCTACACCG
EST: GATGAAGCTCTGCAACGAGAG ATTCAAGCTGCTTTTCGCACAGATGAAATCCGAAGAACTCCTCCTACACCGEST: gi|116416335|gb|EG458927.1|EG458927
genomic: GATGAAGCTCTGCAACGAGAGgtaagcgaaa ... gttgcaccagATTCAAGCTGCTTTTCGCACAGATGAAATCCGAAGAACTCCTCCTACACCG
EST: CATTACTCCCTGATGACAAACAAGAACTCGATGAAGCTCTGCAACGAGAG ATTCAAGCTGCTTTTCGCACAGATGAAATCCGAAGAACTCCTCCTACACCG
genomic: CATTACT-CCTGATGACAAACAAGAACTCGATGAAGCTCTGCAACGAGAGgtaagcgaaa ... gttgcaccagATTCAAGCTGCTTTTCGCACAGATGAAATCCGAAGAACTCCTCCTACACCG
tcaataaagcttcttttgcatgaattctactaaaactctgtttttgttgcaccagATTCAAGCTGCTTTTCGCACAGATGAAATCCGAAGAACTCCTCCTACACCGCAAGATGAAATGAGAGCAGGGATGAGCTACTTCCATGAGACAATCTGGA
tactaaa putative branch site (score: 1)
tttttgtt putative PPT
tactaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcgaaactaaagaactcaataaagcttcttttgcatgaattctactaaaactctgtttttgttgcaccagATTCAAGCTGCTTTTCGCACAGATGAAATCCGAAGAACTCCTCCTACACCGCAAGATGAAATGAGAGCAGGGATGAGCTACTTCCATGAGACAATCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG