1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...agaacatctggtaatgacattataatctcccacttgtttaatatctgaaagaaatagaaaaatttgattaaagatccctctgtgtatatctttcttacagAAGCATGCAACTTGTTCTGCCCCGAGGTCTCAAACTGGTGTTTCTCTAAGACGTTGCCTCTTAGCAAGCTTCAAGAAAAAGGGTTTCTGGAGAACAACAA
species | Arabidopsis thaliana |
transcript | AT2G42470.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
tgaaagaaatagaaaaatttgattaaagatccctctgtgtatatctttcttacagAAGCATGCAACTTGTTCTGCCCCGAGGTCTCAAACTGGTGTTTCTCTAAGACGTTGCCTCTTAGCAAGCTTCAAGAAAAAGGGTTTCTGGAGAACAACAA
atttgat putative branch site (score: 5)
tatctttctt putative PPT
aaatagaaaaatttga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agaacatctggtaatgacattataatctcccacttgtttaatatctgaaagaaatagaaaaatttgattaaagatccctctgtgtatatctttcttacagAAGCATGCAACTTGTTCTGCCCCGAGGTCTCAAACTGGTGTTTCTCTAAGACGTTGCCTCTTAGCAAGCTTCAAGAAAAAGGGTTTCTGGAGAACAACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - ctcccac
- - - - - - - - - - - - - - - - - - - - - - - -aaagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - -agaaaaa