1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtacttaatctgttagaacaaagccttgaaagaagtttgaaatgttttggtatctgttttgcttatgaggatgtgggatttttgttgaatagGGTGTTTCTGCAGTGGGAGCATTTTACCAATTGCTTAGTCAATCAAGCTTAAGTATATTGCCCTCTGAAGAGAAGAAACCTGTAGCTCCGGTCGAATCAT
species | Arabidopsis thaliana |
transcript | AT2G41540.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTGATAGCATAAGCGGCAAGGGAATGATTCAG GGTGTTTCTGCAGTGGGAGCATTTTACCAATTGCTTAGTCAATCAAGCTTAEST: gi|86083325|gb|DR379084.1|DR379084
genomic: GTGATAGCATAAGCGGCAAGGGAATGATTCAGgtacttaatc ... tgttgaatagGGTGTTTCTGCAGTGGGAGCATTTTACCAATTGCTTAGTCAATCAAGCTTA
EST: AAATAAATAGAGACATGGGTGATAGCATAAGCGGCAAGGGAATGATTCAG GGTGTTTCTGCAGTGGGAGCATTTTACCAATTGCTTAGTCAATCAAGCTTA
genomic: AAATAAATAGAGACATGGGTGATAGCATAAGCGGCAAGGGAATGATTCAGgtacttaatc ... tgttgaatagGGTGTTTCTGCAGTGGGAGCATTTTACCAATTGCTTAGTCAATCAAGCTTA
tgaaatgttttggtatctgttttgcttatgaggatgtgggatttttgttgaatagGGTGTTTCTGCAGTGGGAGCATTTTACCAATTGCTTAGTCAATCAAGCTTAAGTATATTGCCCTCTGAAGAGAAGAAACCTGTAGCTCCGGTCGAATCAT
tttttgtt CT-rich tract
atttttgttgaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacttaatctgttagaacaaagccttgaaagaagtttgaaatgttttggtatctgttttgcttatgaggatgtgggatttttgttgaatagGGTGTTTCTGCAGTGGGAGCATTTTACCAATTGCTTAGTCAATCAAGCTTAAGTATATTGCCCTCTGAAGAGAAGAAACCTGTAGCTCCGGTCGAATCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA