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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcattctcttctcagcttttttattgttctaccatggtctagtcaaaattgttttatactttatcagttaagatataattggatgttaattttgcgaacaatgtgctgaatcagcacatagttctgttattgtcttattgaacacatttttattttacttacctgcagAGGGTAGCTGACTTTACCAGCTGTGCATCCATATTTTTGGAAAAGAGAACACCTGATGGCGCATCTGACGCATTGGTTCCAATTGCCAATGCCTTATCAA

Basic information

species Arabidopsis thaliana
transcript AT2G41520.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116471348|gb|EG513940.1|EG513940
EST:     TGGATCGACGAACTACTATAGAAGCAGCTGAAGGCTTACAACAGGCTCAA                         AGGGTAGCTGACTTTACCAGCTGTGCATCCATATTTTTGGAAAAGAGAACA
genomic: TGGATCGACGAACTACTATAGAAGCAGCTGAAGGTTTACAACAGGCTCAAgtatgcattc ... ttacctgcagAGGGTAGCTGACTTTACCAGCTGTGCATCCATATTTTTGGAAAAGAGAACA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcacatagttctgttattgtcttattgaacacatttttattttacttacctgcagAGGGTAGCTGACTTTACCAGCTGTGCATCCATATTTTTGGAAAAGAGAACACCTGATGGCGCATCTGACGCATTGGTTCCAATTGCCAATGCCTTATCAA
                                          tacttac  putative branch site (score: 1)
                                 tttttattttactt  CT-rich tract
                     ttattgaacacatttt  TA-rich tract