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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatggttcttgtacatgataccacctatttgtacacattgacttgtatttttcttttgaggaggtaaatgattatgattagctcaatagatgttttaacgtggcagGAAGGATATATAAGTTATATATGGGGCTACTTGCTGTCTTTTGTACAAACTCTATTAACATCCACGCTGGTCTGAATGGCCTTGAAATCGGTCAAACAGT

Basic information

species Arabidopsis thaliana
transcript AT2G41490.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G41490.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: Vv08s0007g05920.t01 (Vitis vinifera), 3'ss of exon 4
gtaatggttcttgtacatgat-accacctatttgtacacattgacttgtatttttcttttgaggaggtaaatgatta-tgattagctcaatagatgttttaacgtgg-cagGAAGGATATATAAGTTATATATGGGGCTACTTGCTGTCTTTTGTACAAACTCTATTAACATCCACGCTGGTCTGAATGGCCTTGAAATCGGTCAAACAGT
          |  |  || || || ||  ||||| ||   |||  || | |||   | |||||  | | |    ||   || |   |  |   ||   || | |||  ||||| |||||||||| ||||||||||| ||  | ||||| ||||| || ||||| || || || || |||||| | |||||||||||| | || || || ||
------agcttgatgaataattactac--atttgaac-tgttgg-ttat-tttgattattgagttgtttatcctttggcgactgcttacaactataccttgatgtgaacagGATGGATATATAAATTATATATGGGACTTTTGGCTGTATTTTGCACGAACTCCATCAATATACATGCTGGTTTAAATGGCCTTGAAGTTGGGCAGACTGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttttgaggaggtaaatgattatgattagctcaatagatgttttaacgtggcagGAAGGATATATAAGTTATATATGGGGCTACTTGCTGTCTTTTGTACAAACTCTATTAACATCCACGCTGGTCTGAATGGCCTTGAAATCGGTCAAACAGT
                                         ttttaac  putative branch site (score: 2)
             taaatgattatgatta  TA-rich tract