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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagatctgatattcctatgttattaaacagcccgtttcaataatacttttggtattcttttctttccctttctctttcttacatgagcattttctatcatgtagGTACGCATTTGGGATTACTACGGCCACCAAAAGTATTCTTTGATGAATGACTTAGATAAGACACTGGACGATGCTAACCTACAAATGGATCAGGAT

Basic information

species Arabidopsis thaliana
transcript AT2G40930.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116389222|gb|EG431814.1|EG431814
EST:     GAGAGCTCCATCGAAGAGCCTGTGAAATTTTTGACCTCGACTCAGAGCAT                         GTACGCATTTGGGATTACTACGGCCACCAAAAGTATTCTTTGATGAATGAC
genomic: GAGAGCTCCATCGAAGAGCCTGTGAAATTTTTGACCTCGACTCAGAGCATgtaaagatct ... tatcatgtagGTACGCATTTGGGATTACTACGGCCACCAAAAGTATTCTTTGATGAATGAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggtattcttttctttccctttctctttcttacatgagcattttctatcatgtagGTACGCATTTGGGATTACTACGGCCACCAAAAGTATTCTTTGATGAATGACTTAGATAAGACACTGGACGATGCTAACCTACAAATGGATCAGGAT
                          ttcttac  putative branch site (score: 2)
                                        ttttctatc  putative PPT
                                       attttctat  TA-rich tract