1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aattatgtagctctgcggatttgtcttcacttaaaccataaatgtgtaaatgctatgttttgtcccattttatcttctcaatttctcaaatattaaacagGAACAAGGGATTGAAATTCTAAACAAAGCCATAGCAGCATGCACTGAGACAATTGAGACACACAAAGGCAAGCTTGTCGTTAAGGAGGGGGCTAGAGCTG
species | Arabidopsis thaliana |
transcript | AT2G40290.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACTCAGACACTTGACAAG GAACAAGGGATTGAAATTCTAAACAAAGCCATAGCAGCATGCACTGAGACAEST: gi|116410699|gb|EG453291.1|EG453291
genomic: ACTCAGACACTTGACAAGgttaggcaat ... tattaaacagGAACAAGGGATTGAAATTCTAAACAAAGCCATAGCAGCATGCACTGAGACA
EST: AATTGGTTGCTCCACCTCTGTATGTCCTTACTACTCAGACACTTGACAAG GAACAAGGGATTGAAATTCTAAACAAAGCCATAGCAGCATGCACTGAGACAEST: gi|124791496|gb|EH881175.1|EH881175
genomic: AATTGGTTGCTCCACCTCTGTATGTCCTTACTACTCAGACACTTGACAAGgttaggcaat ... tattaaacagGAACAAGGGATTGAAATTCTAAACAAAGCCATAGCAGCATGCACTGAGACA
EST: TTACTACTCAGACACTTGACAAG GAACAAGGGATTGAAATTCTAAACAAAGCCATAGCAGCATGCACTGAGACA
genomic: TTACTACTCAGACACTTGACAAGgttaggcaat ... tattaaacagGAACAAGGGATTGAAATTCTAAACAAAGCCATAGCAGCATGCACTGAGACA
gtaaatgctatgttttgtcccattttatcttctcaatttctcaaatattaaacagGAACAAGGGATTGAAATTCTAAACAAAGCCATAGCAGCATGCACTGAGACAATTGAGACACACAAAGGCAAGCTTGTCGTTAAGGAGGGGGCTAGAGCTG
aatttctcaaatatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aattatgtagctctgcggatttgtcttcacttaaaccataaatgtgtaaatgctatgttttgtcccattttatcttctcaatttctcaaatattaaacagGAACAAGGGATTGAAATTCTAAACAAAGCCATAGCAGCATGCACTGAGACAATTGAGACACACAAAGGCAAGCTTGTCGTTAAGGAGGGGGCTAGAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT