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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtaaaacattttcttctcttgattcttgatttcgttagacgagttagttaattttggttgtgtgttctgtttctgcagGCTGTTTATGTGCTTTTCAGGGATGATCATACCATGAAACTACCTCATTTTATAGCCATTGCTGGTTTGATTTGTGCGATTTTCGCTATTGGGATTCCTC

Basic information

species Arabidopsis thaliana
transcript AT2G39890.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|152035994|gb|AU237074.2|AU237074
EST:     TTTTCATGATTAATTGTGGATTCATTATCCTAGCTGGTTCCGCCTTAAAG                         GCTGTTTATGTGCTTTTCAGGGATGATCATACCATGAAACTACCTCATTTT
genomic: TTTTCATGATTAATTGTGGATTCATTATCCTAGCTGGTTCCGCCTTAAAGgtagtaaaac ... gtttctgcagGCTGTTTATGTGCTTTTCAGGGATGATCATACCATGAAACTACCTCATTTT
EST: gi|116479428|gb|EG522020.1|EG522020
EST:     TTTTCATGATTAATTGTGGATTCATTATCCTAGCTGGTTCCGCCTTAAAG                         GCTGTTTATGTGCTTTTCAGGGATGATCATACCATGAAACTACCTCATTTT
genomic: TTTTCATGATTAATTGTGGATTCATTATCCTAGCTGGTTCCGCCTTAAAGgtagtaaaac ... gtttctgcagGCTGTTTATGTGCTTTTCAGGGATGATCATACCATGAAACTACCTCATTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttgatttcgttagacgagttagttaattttggttgtgtgttctgtttctgcagGCTGTTTATGTGCTTTTCAGGGATGATCATACCATGAAACTACCTCATTTTATAGCCATTGCTGGTTTGATTTGTGCGATTTTCGCTATTGGGATTCCTC
                      agttaat  putative branch site (score: 4)
                                         ttctgtttct  putative PPT
                  agttagttaatttt  TA-rich tract