1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttctgaccagagagtgttttaaatagatcagctctttagctattggtgcaagatcactgagcttacgtgtgcttaccctattctttttattttatttcagCATTTGGACATAATGGTCTGGTGCATCAGACATGGATTTCTGGATGATGTGAGGTCTCGATATTCGAATTTCACATCGTGGAATGCACTGGTAGGGGAAA
species | Arabidopsis thaliana |
transcript | AT2G39810.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGCTTCAAGATGTGCAGACGCTGAGAGAGAACATTGGTAAAACAAAGCAG CATTTGGACATAATGGTCTGGTGCATCAGACATGGATTTCTGGATGATGTGEST: gi|116394352|gb|EG436944.1|EG436944
genomic: AGCTTCAAGATGTGCAGACGCTGAGAGAGAACATTGGTAAAACAAAGCAGgtcagccatg ... tttatttcagCATTTGGACATAATGGTCTGGTGCATCAGACATGGATTTCTGGATGATGTG
EST: AGCTTCAAGATGTGCAGACGCTGAGAGAGAACATTGGTAAAACAAAGCAG CATTTGGACATAATGGTCTGGTGCATCAGACATGGATTTCTGGATGATGTGEST: gi|116394351|gb|EG436943.1|EG436943
genomic: AGCTTCAAGATGTGCAGACGCTGAGAGAGAACATTGGTAAAACAAAGCAGgtcagccatg ... tttatttcagCATTTGGACATAATGGTCTGGTGCATCAGACATGGATTTCTGGATGATGTG
EST: AGCTTCAAGATGTGCAGACGCTGAGAGAGAACATT-GTAAAACAAAGCAG CATTTGGACATAATGGTCTGGTGCATCAGACATGGATTTCTGGATGATGTGEST: gi|116394338|gb|EG436930.1|EG436930
genomic: AGCTTCAAGATGTGCAGACGCTGAGAGAGAACATTGGTAAAACAAAGCAGgtcagccatg ... tttatttcagCATTTGGACATAATGGTCTGGTGCATCAGACATGGATTTCTGGATGATGTG
EST: AGCTTCAAGATGTGCAGACGCTGAGAGAGAACATTGGTAAAACAAAGCAG CATTTGGACATAATGGTCTGGTGCATCAGACATGGATTTCTGGATGATGTGEST: gi|116394335|gb|EG436927.1|EG436927
genomic: AGCTTCAAGATGTGCAGACGCTGAGAGAGAACATTGGTAAAACAAAGCAGgtcagccatg ... tttatttcagCATTTGGACATAATGGTCTGGTGCATCAGACATGGATTTCTGGATGATGTG
EST: AGCTTCAAGATGTGCAGACGCTGAGAGAGAACATTGGTAAAACAAAGCAG CATTTGGACATAATGGTCTGGTGCATCAGACATGGATTTCTGGATGATGTGEST: gi|116394353|gb|EG436945.1|EG436945
genomic: AGCTTCAAGATGTGCAGACGCTGAGAGAGAACATTGGTAAAACAAAGCAGgtcagccatg ... tttatttcagCATTTGGACATAATGGTCTGGTGCATCAGACATGGATTTCTGGATGATGTG
EST: AGCTTCAAGATGTGCAGACGCTGAGAGAGAACATTGGCAAAACAAAGCAG CATTTGGACATAATGGTCTGGTGCATCAGACATGGATTTCTGGATGATGTGEST: gi|116394341|gb|EG436933.1|EG436933
genomic: AGCTTCAAGATGTGCAGACGCTGAGAGAGAACATTGGTAAAACAAAGCAGgtcagccatg ... tttatttcagCATTTGGACATAATGGTCTGGTGCATCAGACATGGATTTCTGGATGATGTG
EST: AAGATGTGCAGACGCTGAGAGAGAACATTGGTAAAACAAAGCAG CATTTGGACATAATGGTCTGGTGCATCAGACATGGATTTCTGGATGATGTGEST: gi|116394344|gb|EG436936.1|EG436936
genomic: AAGATGTGCAGACGCTGAGAGAGAACATTGGTAAAACAAAGCAGgtcagccatg ... tttatttcagCATTTGGACATAATGGTCTGGTGCATCAGACATGGATTTCTGGATGATGTG
EST: GCTTCAAGATGTGCAGACGCTGAGAGAGAACATT-GT-AAACAAAAGCAG CATTTGGACATAATGGTCTGGTGCATCAGACATGGATTTCTGGATGATGT
genomic: GCTTCAAGATGTGCAGACGCTGAGAGAGAACATTGGTAAAAC-AAAGCAGgtcagccatg ... tttatttcagCATTTGGACATAATGGTCTGGTGCATCAGACATGGATTTCTGGATGATGT
gtgcaagatcactgagcttacgtgtgcttaccctattctttttattttatttcagCATTTGGACATAATGGTCTGGTGCATCAGACATGGATTTCTGGATGATGTGAGGTCTCGATATTCGAATTTCACATCGTGGAATGCACTGGTAGGGGAAA
tgcttac putative branch site (score: 2)
cttaccctattctttt CT-rich tract
tattctttttatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttctgaccagagagtgttttaaatagatcagctctttagctattggtgcaagatcactgagcttacgtgtgcttaccctattctttttattttatttcagCATTTGGACATAATGGTCTGGTGCATCAGACATGGATTTCTGGATGATGTGAGGTCTCGATATTCGAATTTCACATCGTGGAATGCACTGGTAGGGGAAA
- - - - - - - - - - aaataga
- - - - - - - - - - - - - - - - - - - - - - - - -aagatca