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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcttcaccatattaaagtgtttcttgttttctctatttgtttctttatactcttattctccaagtggctgattaattcatatggctgtcttaactcctgcaattatactggcttctatagATACATCTGAAGGATCTTGCCAAGAAGAGAAGATCTTGTACAAATTGGTTTCTGGTCTTCACTCATCCATTTCAGTTCATATCGCTTCAGATTATTTACT

Basic information

species Arabidopsis thaliana
transcript AT2G38960.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G38960.3 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA15G23150.2 (Glycine max), 3'ss of exon 4
gtaagcttcaccatattaaagtgtttcttgttttctctatttgtttctttatactcttattctccaagtggctgattaattcatatggctgtcttaactcctgcaattatactggcttctatagATACATCTGAAGGATCTTGCCAAGAAGAGAAGATCTTGTACAAATTGGTTTCTGGTCTTCACTCATCCATTTCAGTTCATATCGCTTCAGATTATTTACT
                  |  |   || |||| |     | ||||||||| || |   |     |      ||| || ||  |  | ||||| | |     |  ||  | | || ||||| ||||| | ||| | |  |  |||||||| || ||||| ||||| |||||| | |||||||||||||| ||||| ||| ||||||| ||||| |||||| ||||
------------------atattggtcatgttcttatcgtctgtttcttt-tagtgaaagatatctttaaactg-ttcataaaagtagctgtttaa----ttagaaaaaaattgtcttctgtagATCCGTCTCAGGAGTTATGCCAAGAGGAAAAGATTTTGTATAAATTGATATCTGGTCTTCACTCCTCCATATCAATTCATATAGCTTCTGATTATCTACT

upper sequence: AT2G38960.3 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: Vv10s0003g03950.t01 (Vitis vinifera), 3'ss of exon 4
gtaagcttcaccatattaaagtgtttcttgttttctctatttgtttctttatactcttattctccaagtggctgattaattcatatggctgtcttaactcctgcaattatactggcttctatagATACATCTGAAGGATCTTGCCAAGAAGAGAAGATCTTGTACAAATTGGTTTCTGGTCTTCACTCATCCATTTCAGTTCATATCGCTTCAGATTATTTACT
               |||     || | |  |      |   | ||| ||  |    |   |||||||  ||| |||   |  ||||    | |    |  ||  |||  ||    |  |  |||| |||||| || || ||| |||||  |||| || |||||||||||| | |||||||||||||| ||||| ||||| ||||| ||| | |||||| | ||
---------------ttatgagattacctagt------agaagcttcctttaagcaatcccctccaagctgctcattctctactatgatgatttc--ttgttgatatttgaccca-tcatgcagATCCATCTGGAGAATTTTGTCAAGAGAAGAAAATATTGTACAAATTGATATCTGGTCTTCACTCCTCCATATCAGTCCATATAGCTGCTGATTATCTGCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggctgattaattcatatggctgtcttaactcctgcaattatactggcttctatagATACATCTGAAGGATCTTGCCAAGAAGAGAAGATCTTGTACAAATTGGTTTCTGGTCTTCACTCATCCATTTCAGTTCATATCGCTTCAGATTATTTACT
                      tcttaac  putative branch site (score: 2)
                                              cttctat  putative PPT
     attaattcatat  TA-rich tract