1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaccatttcaatacaataattcaagtacgtgttgttgctattggtattgttgatacaacgattactttttttatccccagGCTGGACAAAGATAGAGGCAATCGATTCGCTGGTGCGTAAAGCAGGATACAATGGTGTAATAACAGAAGCAGTGCGTAGGCGAATCAATCTAACGCGTTA
species | Arabidopsis thaliana |
transcript | AT2G38710.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TAATACAAAGCGAAGCGCCACATATTTGCCTGAGGTGCCAGCTCATGAAG GCTGGACAAAGATAGAGGCAATCGATTCGCEST: gi|301501251|gb|HO206791.1|HO206791
genomic: TAATACAAAGCGAAGCGCCACATATTTGCCTGAGGTGCCAGCTCATGAAGgtaccatttc ... ttatccccagGCTGGACAAAGATAGAGGCAATCGATTCGC
EST: TAATACAAAGCGAAGCGCCACATATTTGCCTGAGGTGCCAGCTCATGAAG GCTGGACAAAGATAGAGGCAATCGATTCGCTGGTGCGTAAAGCAGGATACAEST: gi|125239830|gb|EL253915.1|EL253915
genomic: TAATACAAAGCGAAGCGCCACATATTTGCCTGAGGTGCCAGCTCATGAAGgtaccatttc ... ttatccccagGCTGGACAAAGATAGAGGCAATCGATTCGCTGGTGCGTAAAGCAGGATACA
EST: TAATACAAAGCGAAGCGCCACATATTTGCCTGAGGTGCCAGCTCATGAAG GCTGGACAAAGATAGAGGCAATCGATTCGCTGGEST: gi|164015533|gb|ES120530.1|ES120530
genomic: TAATACAAAGCGAAGCGCCACATATTTGCCTGAGGTGCCAGCTCATGAAGgtaccatttc ... ttatccccagGCTGGACAAAGATAGAGGCAATCGATTCGCTGG
EST: CACATATTTGCCTGAGGTGCCAGCTCATGAAG GCTGGACAAAGATAGAGGCAATCGATTCGCTGGTGCGTAAAGCAGGATACAEST: gi|86077035|gb|DR372792.1|DR372792
genomic: CACATATTTGCCTGAGGTGCCAGCTCATGAAGgtaccatttc ... ttatccccagGCTGGACAAAGATAGAGGCAATCGATTCGCTGGTGCGTAAAGCAGGATACA
EST: TAATACAAAGCGAAGCGCCACATATTTGCCTGAGGTGCCAGCTCATGAAG GCTGGACAAAGATAGAGGCAATCGATTCGCTGGTGCGTAAAGCAGGATACA
genomic: TAATACAAAGCGAAGCGCCACATATTTGCCTGAGGTGCCAGCTCATGAAGgtaccatttc ... ttatccccagGCTGGACAAAGATAGAGGCAATCGATTCGCTGGTGCGTAAAGCAGGATACA
tacgtgttgttgctattggtattgttgatacaacgattactttttttatccccagGCTGGACAAAGATAGAGGCAATCGATTCGCTGGTGCGTAAAGCAGGATACAATGGTGTAATAACAGAAGCAGTGCGTAGGCGAATCAATCTAACGCGTTA
tgttgat putative branch site (score: 4)
ttactttttttatccc putative PPT
attactttttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaccatttcaatacaataattcaagtacgtgttgttgctattggtattgttgatacaacgattactttttttatccccagGCTGGACAAAGATAGAGGCAATCGATTCGCTGGTGCGTAAAGCAGGATACAATGGTGTAATAACAGAAGCAGTGCGTAGGCGAATCAATCTAACGCGTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC